Matthew Bauer 1c8aba8334 treewide: use blas and lapack ... This makes packages use lapack and blas, which can wrap different BLAS/LAPACK implementations. treewide: cleanup from blas/lapack changes A few issues in the original treewide: - can’t assume blas64 is a bool - unused commented code		2020-04-17 16:24:09 -05:00
..
ants	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
aragorn	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
bayescan	bayescan: init at 2.1 (#68191)	2020-01-09 12:38:53 -05:00
bcftools	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
bedtools	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
bftools	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
blast	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
bowtie2	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
bwa	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
cd-hit	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
clustal-omega	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
cmtk	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
conglomerate	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
dcm2niix	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
deeptools	deeptools: 3.3.1 -> 3.4.1	2020-03-30 21:47:32 -07:00
delly	delly: 0.8.1 -> 0.8.2	2020-02-11 19:21:59 +11:00
diamond	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
ecopcr	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
eggnog-mapper	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
emboss	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
est-sfs	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
exonerate	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
EZminc	EZminc: 2017-08-29 -> 2019-07-25; mark unbroken	2019-10-26 09:55:30 -07:00
freebayes	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
hisat2	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
hmmer	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
igv	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
inormalize
itsx	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
iv	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
kallisto	kallisto: 0.46.1 -> 0.46.2	2020-02-15 22:39:58 +01:00
kssd	kssd: init at 1.0	2019-12-08 16:48:59 +01:00
last	last: 1047 -> 1060	2020-03-27 04:12:41 +00:00
macse	macse: init at 2.03	2019-09-24 08:24:07 +02:00
manta	manta: init 1.6.0	2020-01-24 02:02:19 -08:00
megahit	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
messer-slim	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
migrate	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
minc-tools	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
minc-widgets
minia	minia: init at 3.2.1	2019-12-20 11:27:04 +11:00
minimap2	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
mni_autoreg	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
mosdepth	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
mrbayes	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
mrtrix	mrtrix: init at 3.0_RC3_latest	2020-02-16 22:25:25 -05:00
muscle	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
N3
ncbi-tools	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
neuron	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
niftyreg	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
niftyseg	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
octopus	treewide: name -> pname (easy cases) (#66585)	2019-08-15 13:41:18 +01:00
paml	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
picard-tools	picard-tools: 2.22.0 -> 2.22.2	2020-04-01 17:29:55 +00:00
platypus	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
plink	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
plink-ng	treewide: use blas and lapack	2020-04-17 16:24:09 -05:00
poretools	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
prodigal	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
raxml	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
samtools	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
seaview	seaview: 5.0 -> 5.0.2	2020-03-26 00:25:29 +00:00
snpeff	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
somatic-sniper	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
sortmerna	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
spades	Revert "Revert "Merge master into staging-next""	2020-02-05 19:41:25 +01:00
stacks	stacks: 2.41 -> 2.52	2020-03-30 16:13:02 -07:00
star	star: 2.7.2b -> 2.7.3a	2019-11-03 10:23:05 +01:00
strelka	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
sumatools	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
svaba	svaba: init at 1.1.0	2019-12-08 14:51:05 +01:00
tebreak	tebreak: init at 1.0	2019-12-29 17:16:10 +11:00
trimal	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
truvari	truvari:1.3.2->1.3.4	2020-03-02 09:15:58 +01:00
varscan	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
vcftools	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
xenomapper	python.pkgs wide: fix problematic urls	2020-01-10 21:02:12 -08:00