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c35f615aea
Genomic mapper. Open-source version of DRAGEN. Tests are run during execution with google-tests.
61 lines
1.7 KiB
Diff
61 lines
1.7 KiB
Diff
diff --git a/src/include/map/SeedPosition.hpp b/src/include/map/SeedPosition.hpp
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index 30a7d47..c05af16 100644
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--- a/src/include/map/SeedPosition.hpp
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+++ b/src/include/map/SeedPosition.hpp
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@@ -16,6 +16,7 @@
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#define MAP_SEED_POSITION_HPP
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#include <ostream>
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+#include <cstdint>
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#include "sequences/Seed.hpp"
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diff --git a/src/include/sequences/Read.hpp b/src/include/sequences/Read.hpp
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index 460c1cb..c7ff619 100644
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--- a/src/include/sequences/Read.hpp
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+++ b/src/include/sequences/Read.hpp
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@@ -16,6 +16,7 @@
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#define SEQUENCES_READ_HPP
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#include <iostream>
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+#include <cstdint>
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#include <string>
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#include <vector>
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diff --git a/src/include/sequences/Seed.hpp b/src/include/sequences/Seed.hpp
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index a242153..dd4d23b 100644
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--- a/src/include/sequences/Seed.hpp
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+++ b/src/include/sequences/Seed.hpp
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@@ -16,6 +16,7 @@
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#define SEQUENCES_SEED_HPP
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#include <ostream>
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+#include <cstdint>
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#include <vector>
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#include "sequences/Read.hpp"
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diff --git a/src/lib/sequences/tests/unit/CrcHasherMocks.hpp b/src/lib/sequences/tests/unit/CrcHasherMocks.hpp
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index 1866be7..5d9b7d7 100644
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--- a/src/lib/sequences/tests/unit/CrcHasherMocks.hpp
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+++ b/src/lib/sequences/tests/unit/CrcHasherMocks.hpp
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@@ -2,6 +2,7 @@
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#include <array>
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#include <cassert>
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+#include <cstdint>
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#include <cstdlib>
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#include <string>
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diff --git a/stubs/dragen/src/host/dragen_api/read_group_list.hpp b/stubs/dragen/src/host/dragen_api/read_group_list.hpp
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index eefb9ae..623a77f 100644
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--- a/stubs/dragen/src/host/dragen_api/read_group_list.hpp
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+++ b/stubs/dragen/src/host/dragen_api/read_group_list.hpp
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@@ -14,6 +14,7 @@
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#define __READ_GROUP_LIST_HPP__
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#include "dragen_exception.hpp"
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+#include <cstdint>
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class ReadGroupList {
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public:
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const std::string &getReadGroupName(const uint16_t idx) const {
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