mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-12 08:43:06 +00:00
571c71e6f7
We are migrating packages that meet below requirements:
1. using `callPackage`
2. called path is a directory
3. overriding set is empty (`{ }`)
4. not containing path expressions other than relative path (to
makenixpkgs-vet happy)
5. not referenced by nix files outside of the directory, other
than`pkgs/top-level/all-packages.nix`
6. not referencing nix files outside of the directory
7. not referencing `default.nix` (since it's changed to `package.nix`)
8. `outPath` doesn't change after migration
The tool is here: https://github.com/Aleksanaa/by-name-migrate.
35 lines
951 B
Nix
35 lines
951 B
Nix
{lib, stdenv, fetchFromGitHub, zlib, python3, bzip2, xz}:
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stdenv.mkDerivation rec {
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pname = "bedtools";
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version = "2.31.1";
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src = fetchFromGitHub {
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owner = "arq5x";
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repo = "bedtools2";
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rev = "v${version}";
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sha256 = "sha256-rrk+FSv1bGL0D1lrIOsQu2AT7cw2T4lkDiCnzil5fpg=";
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};
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strictDeps = true;
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nativeBuildInputs = [
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python3
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];
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buildInputs = [ zlib bzip2 xz ];
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cxx = if stdenv.cc.isClang then "clang++" else "g++";
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cc = if stdenv.cc.isClang then "clang" else "gcc";
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buildPhase = "make prefix=$out SHELL=${stdenv.shell} CXX=${cxx} CC=${cc} -j $NIX_BUILD_CORES";
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installPhase = "make prefix=$out SHELL=${stdenv.shell} CXX=${cxx} CC=${cc} install";
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meta = with lib; {
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description = "Powerful toolset for genome arithmetic";
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license = licenses.gpl2;
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homepage = "https://bedtools.readthedocs.io/en/latest/";
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maintainers = with maintainers; [ jbedo ];
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platforms = platforms.unix;
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};
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}
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