mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-30 17:43:42 +00:00
141 lines
5.1 KiB
Nix
141 lines
5.1 KiB
Nix
{ stdenv
|
|
, fetchFromGitHub
|
|
, fetchpatch
|
|
}:
|
|
stdenv.mkDerivation rec {
|
|
version = "8.4.beta0";
|
|
name = "sage-src-${version}";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "sagemath";
|
|
repo = "sage";
|
|
rev = version;
|
|
sha256 = "1jph4slscpni0smp2fxs3s12282c9r3mdfbgxpyx67gic0d9iya8";
|
|
};
|
|
|
|
nixPatches = [
|
|
# https://trac.sagemath.org/ticket/25722
|
|
./patches/test-in-tmpdir.patch
|
|
|
|
# https://trac.sagemath.org/ticket/25358
|
|
(fetchpatch {
|
|
name = "safe-directory-test-without-patch.patch";
|
|
url = "https://git.sagemath.org/sage.git/patch?id2=8bdc326ba57d1bb9664f63cf165a9e9920cc1afc&id=dc673c17555efca611f68398d5013b66e9825463";
|
|
sha256 = "1hhannz7xzprijakn2w2d0rhd5zv2zikik9p51i87bas3nc658f7";
|
|
})
|
|
|
|
# Unfortunately inclusion in upstream sage was rejected. Instead the bug was
|
|
# fixed in python, but of course not backported to 2.7. So we'll probably
|
|
# have to keep this around until 2.7 is deprecated.
|
|
# https://trac.sagemath.org/ticket/25316
|
|
# https://github.com/python/cpython/pull/7476
|
|
./patches/python-5755-hotpatch.patch
|
|
|
|
# https://trac.sagemath.org/ticket/25315
|
|
(fetchpatch {
|
|
name = "find-libraries-in-dyld-library-path.patch";
|
|
url = "https://git.sagemath.org/sage.git/patch/?h=20d4593876ce9c6004eac2ab6fd61786d0d96a06";
|
|
sha256 = "1k3afq3qlzmgqwx6rzs5wv153vv9dsf5rk8pi61g57l3r3npbjmc";
|
|
})
|
|
|
|
# https://trac.sagemath.org/ticket/25345
|
|
# (upstream patch doesn't apply on 8.2 source)
|
|
./patches/dochtml-optional.patch
|
|
|
|
# work with pari with threads enabled at compile time (disable them at runtime)
|
|
# https://trac.sagemath.org/ticket/26002
|
|
./patches/pari-no-threads.patch
|
|
];
|
|
|
|
packageUpgradePatches = [
|
|
# matplotlib 2.2.2 deprecated `normed` (replaced by `density`).
|
|
# This patch only ignores the warning. It would be equally easy to fix it
|
|
# (by replacing all mentions of `normed` by `density`), but its better to
|
|
# stay close to sage upstream. I didn't open an upstream ticket about it
|
|
# because the matplotlib update also requires a new dependency (kiwisolver)
|
|
# and I don't want to invest the time to learn how to add it.
|
|
./patches/matplotlib-normed-deprecated.patch
|
|
|
|
# Update to 20171219 broke the doctests because of insignificant precision
|
|
# changes, make the doctests less fragile.
|
|
# I didn't open an upstream ticket because its not entirely clear if
|
|
# 20171219 is really "released" yet. It is listed on the github releases
|
|
# page, but not marked as "latest release" and the homepage still links to
|
|
# the last version.
|
|
./patches/eclib-regulator-precision.patch
|
|
|
|
# New glpk version has new warnings, filter those out until upstream sage has found a solution
|
|
# https://trac.sagemath.org/ticket/24824
|
|
./patches/pari-stackwarn.patch # not actually necessary since tha pari upgrade, but necessary for the glpk patch to apply
|
|
(fetchpatch {
|
|
url = "https://salsa.debian.org/science-team/sagemath/raw/58bbba93a807ca2933ca317501d093a1bb4b84db/debian/patches/dt-version-glpk-4.65-ignore-warnings.patch";
|
|
sha256 = "0b9293v73wb4x13wv5zwyjgclc01zn16msccfzzi6znswklgvddp";
|
|
stripLen = 1;
|
|
})
|
|
|
|
# Only formatting changes.
|
|
# https://trac.sagemath.org/ticket/25260
|
|
./patches/numpy-1.14.3.patch
|
|
|
|
# https://trac.sagemath.org/ticket/25862
|
|
./patches/eclib-20180710.patch
|
|
|
|
# https://trac.sagemath.org/ticket/24735
|
|
./patches/singular-4.1.1p2.patch
|
|
|
|
# https://trac.sagemath.org/ticket/25567
|
|
(fetchpatch {
|
|
name = "pari-2.11.0.patch";
|
|
url = "https://git.sagemath.org/sage.git/patch/?id=7af4748cab37d651eaa88be501db88f4a5ffc584";
|
|
sha256 = "13f740ly3c19gcmhjngiycvmc3mcfj61y00i6jv0wmfgpm2z3ank";
|
|
})
|
|
|
|
# ntl upgrade
|
|
(fetchpatch {
|
|
name = "lcalc-c++11.patch";
|
|
url = "https://git.archlinux.org/svntogit/community.git/plain/trunk/sagemath-lcalc-c++11.patch?h=packages/sagemath&id=0e31ae526ab7c6b5c0bfacb3f8b1c4fd490035aa";
|
|
sha256 = "0p5wnvbx65i7cp0bjyaqgp4rly8xgnk12pqwaq3dqby0j2bk6ijb";
|
|
})
|
|
|
|
# cddlib 0.94i -> 0.94j
|
|
(fetchpatch {
|
|
name = "cddlib-0.94j.patch";
|
|
url = "https://git.sagemath.org/sage.git/patch/?id=2ab1546b3e21d1d0ab3b4fcd58576848b3a2d888";
|
|
sha256 = "1c5gnasq7y9xxj762bn79bis0zi8d9bgg7jzlf64ifixsrc5cymb";
|
|
})
|
|
|
|
# arb 2.13.0 -> 2.14.0
|
|
(fetchpatch {
|
|
name = "arb-2.14.0.patch";
|
|
url = "https://git.sagemath.org/sage.git/patch?id2=8.4.beta0&id=8bef4fd2876a61969b516fe4eb3b8ad7cc076c5e";
|
|
sha256 = "00p3hfsfn3w2vxgd9fjd23mz7xfxjfravf8ysjxkyd657jbkpjmk";
|
|
})
|
|
];
|
|
|
|
patches = nixPatches ++ packageUpgradePatches ++ [
|
|
./patches/known-padics-bug.patch
|
|
];
|
|
|
|
postPatch = ''
|
|
# make sure shebangs etc are fixed, but sage-python23 still works
|
|
find . -type f -exec sed \
|
|
-e 's/sage-python23/python/g' \
|
|
-i {} \;
|
|
|
|
echo '#!${stdenv.shell}
|
|
python "$@"' > build/bin/sage-python23
|
|
|
|
# Do not use sage-env-config (generated by ./configure).
|
|
# Instead variables are set manually.
|
|
echo '# do nothing' > src/bin/sage-env-config
|
|
'';
|
|
|
|
configurePhase = "# do nothing";
|
|
|
|
buildPhase = "# do nothing";
|
|
|
|
installPhase = ''
|
|
cp -r . "$out"
|
|
'';
|
|
}
|