mirror of
https://github.com/NixOS/nixpkgs.git
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571c71e6f7
We are migrating packages that meet below requirements:
1. using `callPackage`
2. called path is a directory
3. overriding set is empty (`{ }`)
4. not containing path expressions other than relative path (to
makenixpkgs-vet happy)
5. not referenced by nix files outside of the directory, other
than`pkgs/top-level/all-packages.nix`
6. not referencing nix files outside of the directory
7. not referencing `default.nix` (since it's changed to `package.nix`)
8. `outPath` doesn't change after migration
The tool is here: https://github.com/Aleksanaa/by-name-migrate.
45 lines
1.0 KiB
Nix
45 lines
1.0 KiB
Nix
{ lib, stdenv, fetchurl, htslib, zlib, bzip2, xz, curl, perl, python3, bash }:
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stdenv.mkDerivation rec {
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pname = "bcftools";
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version = "1.21";
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src = fetchurl {
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url = "https://github.com/samtools/bcftools/releases/download/${version}/${pname}-${version}.tar.bz2";
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sha256 = "sha256-UopMwdNVU2jbdacAsio8ldqJP9GCf20wRxbf1F6k4oI=";
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};
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nativeBuildInputs = [
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perl
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python3
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];
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buildInputs = [ htslib zlib bzip2 xz curl ];
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strictDeps = true;
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makeFlags = [
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"HSTDIR=${htslib}"
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"prefix=$(out)"
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"CC=${stdenv.cc.targetPrefix}cc"
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];
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preCheck = ''
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patchShebangs misc/
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patchShebangs test/
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sed -ie 's|/bin/bash|${bash}/bin/bash|' test/test.pl
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'';
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enableParallelBuilding = true;
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doCheck = true;
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meta = with lib; {
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description = "Tools for manipulating BCF2/VCF/gVCF format, SNP and short indel sequence variants";
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license = licenses.mit;
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homepage = "http://www.htslib.org/";
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platforms = platforms.unix;
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maintainers = [ maintainers.mimame ];
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};
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}
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