nixpkgs/pkgs/by-name/eg/eggnog-mapper/package.nix
aleksana 571c71e6f7 treewide: migrate packages to pkgs/by-name, take 1
We are migrating packages that meet below requirements:

1. using `callPackage`
2. called path is a directory
3. overriding set is empty (`{ }`)
4. not containing path expressions other than relative path (to
makenixpkgs-vet happy)
5. not referenced by nix files outside of the directory, other
than`pkgs/top-level/all-packages.nix`
6. not referencing nix files outside of the directory
7. not referencing `default.nix` (since it's changed to `package.nix`)
8. `outPath` doesn't change after migration

The tool is here: https://github.com/Aleksanaa/by-name-migrate.
2024-11-09 20:04:51 +08:00

55 lines
1.2 KiB
Nix

{ lib
, autoPatchelfHook
, fetchFromGitHub
, python3Packages
, wget
, zlib
}:
python3Packages.buildPythonApplication rec {
pname = "eggnog-mapper";
version = "2.1.12";
src = fetchFromGitHub {
owner = "eggnogdb";
repo = pname;
rev = "refs/tags/${version}";
hash = "sha256-+luxXQmtGufYrA/9Ak3yKzbotOj2HM3vhIoOxE+Ty1U=";
};
postPatch = ''
# Not a great solution...
substituteInPlace setup.cfg \
--replace "==" ">="
'';
nativeBuildInputs = [
autoPatchelfHook
];
buildInputs = [
zlib
];
propagatedBuildInputs = [
wget
] ++ (with python3Packages; [
biopython
psutil
xlsxwriter
]);
# Tests rely on some of the databases being available, which is not bundled
# with this package as (1) in total, they represent >100GB of data, and (2)
# the user can download only those that interest them.
doCheck = false;
meta = with lib; {
description = "Fast genome-wide functional annotation through orthology assignment";
license = licenses.gpl2;
homepage = "https://github.com/eggnogdb/eggnog-mapper/wiki";
maintainers = with maintainers; [ luispedro ];
platforms = platforms.all;
};
}