2
0
mirror of https://github.com/NixOS/nixpkgs.git synced 2024-12-15 18:23:09 +00:00
nixpkgs/pkgs/applications/science/biology
Robert Schütz d5cceedbd1 python,pythonPackages: make aliases
Since aliases are disallowed in nixpkgs, this makes usage of Python 2
which is EOL more explicit.
2022-01-16 18:39:59 +00:00
..
ants treewide: avoid use of lib.optional with list in inputs 2021-10-04 13:02:42 -04:00
aragorn
bayescan
bcftools bcftools: 1.13 -> 1.14 2021-10-29 02:49:14 +00:00
bedops bedops: 2.4.39 -> 2.4.40 2021-07-23 01:02:40 +00:00
bedtools lzma: deprecate alias 2021-04-04 19:49:52 +02:00
bftools
blast blast: 2.11.0 -> 2.12.0 2021-09-15 15:33:44 +00:00
bowtie bowtie: 1.3.0 -> 1.3.1 2021-09-15 07:35:44 +00:00
bowtie2 Merge pull request from jbedo/bowtie2 2021-08-07 04:03:47 +03:00
bppsuite
bwa
cd-hit perlPackages.ImageMagick: rename from perlPackages.PerlMagick 2021-08-02 20:05:00 +03:00
clustal-omega
cmtk pkgs/applications: rename name to pname&version part 2 2021-11-07 14:53:06 +01:00
conglomerate
dcm2niix dcm2niix: 1.0.20210317 -> 1.0.20211006 2021-10-29 09:34:20 +00:00
deeptools
delly delly: 0.8.7 -> 0.9.1 2021-11-25 21:19:48 +11:00
diamond diamond: switch to fetchFromGitHub 2021-12-23 19:11:17 +01:00
ecopcr pkgs/applications: rename name to pname&version part 2 2021-11-07 14:53:06 +01:00
eggnog-mapper
emboss pkgs/applications: rename name to pname&version part 2 2021-11-07 14:53:06 +01:00
est-sfs est-sfs: fix darwin build 2021-05-15 12:10:05 +02:00
exonerate
EZminc
fastp fastp: 0.23.1 -> 0.23.2 2021-12-02 08:03:17 +11:00
freebayes lzma: deprecate alias 2021-04-04 19:49:52 +02:00
genmap genmap: init 1.3.0 2021-12-04 06:51:16 +11:00
hisat2
hmmer hmmer: restrict platforms to x86_64 2021-11-20 19:17:57 +00:00
igv
inormalize
itsx
iv pkgs/applications: rename name to pname&version part 2 2021-11-07 14:53:06 +01:00
kallisto
kent lzma: deprecate alias 2021-04-04 19:49:52 +02:00
kssd kssd: switch to fetchFromGitHub 2021-12-23 19:11:17 +01:00
last last: 1179 -> 1256 2021-10-19 13:23:14 +11:00
MACS2 macs2: init at 2.2.7.1 2021-04-14 10:17:53 -04:00
macse treewide: convert phases that contain ":" to dont* = true () 2021-07-18 23:42:48 +02:00
manta
megahit
meme-suite meme-suite: init at 5.1.1 () 2021-04-05 22:43:27 +02:00
messer-slim messer-slim: 3.6 -> 3.7 2021-12-30 20:32:56 +00:00
migrate
minc-tools
minc-widgets
minia
minimap2 minimap2: 2.22 -> 2.23 2021-12-07 15:04:36 +00:00
mni_autoreg
mosdepth mosdepth: convert to buildNimPackage 2021-09-05 11:20:02 +02:00
mrbayes mrbayes: 3.2.7 -> 3.2.7a 2021-07-27 14:30:23 +02:00
mrtrix mrtrix: 3.0.2 -> unstable-2021-11-25 2021-11-30 21:03:53 -08:00
muscle
N3
ncbi-tools
neuron treewide: ensure pre/post phase hooks are strings 2021-08-20 19:08:42 -04:00
niftyreg
niftyseg niftyseg: switch to fetchFromGitHub 2021-12-23 19:11:17 +01:00
obitools obitools3: removed useless python restriction 2021-11-08 07:51:48 +01:00
octopus octopus: 0.7.3 -> 0.7.4 2021-05-11 08:46:00 +10:00
paml
picard-tools picard-tools: 2.26.6 -> 2.26.9 2021-12-22 22:20:36 +11:00
platypus
plink-ng
poretools python,pythonPackages: make aliases 2022-01-16 18:39:59 +00:00
prodigal
quast
raxml
sambamba sambamba 0.8.0 -> 0.8.1 2021-08-31 12:37:49 +03:00
samblaster samblaster: fix darwin build 2021-05-18 13:41:51 +02:00
samtools samtools: pull upstream fix for ncurses-6.3 2021-11-26 13:02:05 +00:00
seaview seaview: 5.0.4 -> 5.0.5 2021-12-12 15:59:16 +00:00
snpeff
somatic-sniper
sortmerna
spades SPAdes: 3.15.2 -> 3.15.3 2021-08-15 11:12:42 +03:00
stacks stacks: 2.59 -> 2.60 2022-01-02 19:23:58 +01:00
star star: 2.7.8a -> 2.7.9a 2021-09-24 10:37:28 +08:00
strelka
subread subread: init 2.0.3 2021-12-14 13:30:23 +11:00
sumatools
svaba lzma: deprecate alias 2021-04-04 19:49:52 +02:00
tebreak tebreak: also use python3 for tests 2022-01-16 18:00:59 +00:00
trimal
truvari truvari: 2.0.2 -> 2.1.1 () 2021-06-15 22:14:20 +02:00
varscan varscan: deprecate phases 2021-08-03 00:04:16 +02:00
vcftools
whisper
xenomapper python3Packages.xenomapper: move to top-level 2022-01-01 02:09:11 +01:00