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angsd
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angsd: 0.938 -> 0.940
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2022-10-14 14:50:26 +00:00 |
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ants
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ants: unpin vtk dependency
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2023-01-27 00:21:26 -05:00 |
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aragorn
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astral
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treewide: set sourceProvenance for packages containing downloaded jars
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2022-06-04 19:47:57 +01:00 |
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bayescan
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bayescan: fix the build
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2022-05-13 12:00:08 +02:00 |
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bcftools
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bcftools: 1.15 -> 1.16
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2022-08-18 18:44:42 +00:00 |
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bedops
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bedops: 2.4.40 -> 2.4.41
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2022-07-19 09:09:52 +10:00 |
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bedtools
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bftools
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treewide: set sourceProvenance for packages containing downloaded jars
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2022-06-04 19:47:57 +01:00 |
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blast
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blast: 2.12.0 -> 2.13.0
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2022-04-29 09:39:10 -05:00 |
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bowtie
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bowtie: fix build on case insensitive file systems
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2022-05-11 03:20:03 -05:00 |
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bowtie2
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bowtie2: 2.4.5 -> 2.5.1
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2023-01-21 21:19:00 +00:00 |
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bppsuite
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bwa
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treewide: replace http by https when https is a permanent redirection
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2023-01-22 02:46:49 +01:00 |
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cd-hit
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clustal-omega
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treewide: add meta.mainProgram to many packages
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2022-04-14 10:24:01 -07:00 |
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cmtk
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treewide: pkgs/applications: mark broken for darwin
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2022-05-29 10:56:04 +02:00 |
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conglomerate
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dcm2niix
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treewide: Rename libyamlcpp* to yaml-cpp*
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2023-01-31 16:22:54 +01:00 |
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deeptools
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treewide: switch to nativeCheckInputs
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2023-01-21 12:00:00 +00:00 |
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delly
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delly: 1.1.5 -> 1.1.6
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2022-11-08 18:21:37 +00:00 |
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diamond
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diamond: 2.1.0 -> 2.1.1
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2023-02-10 02:56:54 +00:00 |
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dssp
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dssp: init at 4.0.5
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2022-07-19 12:17:34 +09:00 |
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ecopcr
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ecopcr: 0.8.0 -> 1.0.1
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2022-12-08 04:35:53 +01:00 |
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eggnog-mapper
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eggnog-mapper: 2.1.9 -> 2.1.10
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2023-02-11 08:43:59 +00:00 |
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emboss
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treewide: replace http by https when https is a permanent redirection
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2023-01-22 02:46:49 +01:00 |
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est-sfs
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exonerate
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EZminc
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EZminc: itk4 -> itk (formally; package is broken)
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2022-09-04 13:36:24 -04:00 |
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fastp
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fastp: 0.23.1 -> 0.23.2
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2021-12-02 08:03:17 +11:00 |
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febio-studio
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febio-studio: init at 1.6.1
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2022-02-21 16:43:36 +01:00 |
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flywheel-cli
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treewide/applications: add sourceType binaryNativeCode for many packages
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2022-06-23 18:38:19 +01:00 |
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freebayes
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freebayes: add -fcommon workaround
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2022-05-14 13:19:17 +01:00 |
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gatk
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gatk: 4.2.6.1 -> 4.3.0.0
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2022-10-16 21:48:30 +08:00 |
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genmap
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treewide: switch to nativeCheckInputs
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2023-01-21 12:00:00 +00:00 |
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hisat2
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hisat2: update homepage
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2022-02-06 15:10:53 +01:00 |
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hmmer
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igv
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igv: 2.15.5 -> 2.16.0
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2023-02-04 18:01:58 +00:00 |
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inormalize
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inormalize/minc-widgets/gimp-plugins: use pname & version
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2023-02-12 22:21:44 +01:00 |
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iqtree
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iqtree: init at 2.2.0.4
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2022-05-30 10:53:40 +02:00 |
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itsx
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iv
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kallisto
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kallisto: 0.46.2 -> 0.48.0
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2022-01-31 09:53:54 -08:00 |
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kent
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kssd
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kssd: pull upstream fix for -fno-common tollchains
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2022-05-21 11:22:53 +01:00 |
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last
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last: 1445 -> 1447
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2023-02-12 17:14:30 +00:00 |
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MACS2
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MACS2: mark broken
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2022-06-06 11:46:22 -07:00 |
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macse
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treewide: set sourceProvenance for packages containing downloaded jars
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2022-06-04 19:47:57 +01:00 |
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mafft
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mafft: 7.505 -> 7.508
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2022-09-09 13:26:38 +09:00 |
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manta
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megahit
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treewide: optional -> optionals where the argument is a list
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2022-10-10 15:40:21 +03:00 |
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meme-suite
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pkgs.applications: remove unused args
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2022-10-12 16:00:16 +02:00 |
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messer-slim
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messer-slim: 4.0 -> 4.0.1
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2022-09-15 22:25:51 +00:00 |
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migrate
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treewide: pkgs/applications: mark broken for darwin
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2022-05-29 10:56:04 +02:00 |
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minc-tools
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minc-widgets
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inormalize/minc-widgets/gimp-plugins: use pname & version
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2023-02-12 22:21:44 +01:00 |
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minia
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minimap2
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minimap2: enable aarch64 builds (#161169)
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2022-03-04 12:27:29 +01:00 |
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mmseqs2
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mmseqs2: init at 14-7e284
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2022-10-31 23:49:10 +09:00 |
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mni_autoreg
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mni_autoreg: unstable-2017-02-22 -> unstable-2022-05-20
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2022-07-26 16:03:12 -04:00 |
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mosdepth
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mosdepth: 0.3.2 -> 0.3.3
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2022-02-12 14:31:47 +00:00 |
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mrbayes
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mrtrix
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treewide: switch to nativeCheckInputs
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2023-01-21 12:00:00 +00:00 |
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muscle
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muscle: add myself to maintainers
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2022-11-22 20:19:17 +01:00 |
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N3
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neuron
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treewide: optional -> optionals where the argument is a list
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2022-10-10 15:40:21 +03:00 |
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niftyreg
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niftyseg
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niftyseg: switch to fetchFromGitHub
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2021-12-23 19:11:17 +01:00 |
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obitools
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octopus
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treewide: add gcc12 flags
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2023-01-27 21:20:52 -06:00 |
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paml
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paml: add -fcommon workaround
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2022-05-22 20:23:12 +01:00 |
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picard-tools
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picard-tools: 2.27.4 -> 2.27.5
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2022-10-08 00:09:59 +00:00 |
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platypus
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plink-ng
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treewide: use optionalString
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2023-02-13 21:52:34 +01:00 |
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poretools
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python,pythonPackages: make aliases
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2022-01-16 18:39:59 +00:00 |
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prodigal
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quast
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treewide/applications: add sourceType binaryNativeCode for many packages
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2022-06-23 18:38:19 +01:00 |
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raxml
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raxml-mpi: remove appendToName to have a consistent package name for repology
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2022-02-28 12:46:15 +01:00 |
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repseek
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repseek: init at 9Sep2014 (#148017)
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2022-01-31 14:59:32 +01:00 |
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sambamba
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sambamba: 0.8.2 -> 1.0.0
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2023-01-22 13:54:41 +00:00 |
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samblaster
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samtools
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Merge pull request #212002 from mothsART/feature/replace_http_by_https
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2023-01-22 03:26:02 +01:00 |
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seaview
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seaview: 5.0.4 -> 5.0.5
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2021-12-12 15:59:16 +00:00 |
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seqkit
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seqkit: init at 2.3.1
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2022-11-04 08:51:32 +01:00 |
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seqtk
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seqtk: init at 1.3
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2022-09-25 19:55:58 -04:00 |
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snpeff
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treewide: replace http by https when https is a permanent redirection
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2023-01-22 02:46:49 +01:00 |
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somatic-sniper
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sortmerna
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pkgs.applications: remove unused args
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2022-10-12 16:00:16 +02:00 |
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spades
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Merge pull request #184694 from r-ryantm/auto-update/SPAdes
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2022-08-23 20:21:42 +02:00 |
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sratoolkit
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sratoolkit: init at 2.11.3
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2022-11-21 20:27:28 +01:00 |
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stacks
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stacks: 2.60 -> 2.62
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2023-02-06 21:36:49 +01:00 |
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star
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star: 2.7.10a -> 2.7.10b
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2023-01-14 06:06:52 +00:00 |
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strelka
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subread
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treewide: replace http by https when https is a permanent redirection
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2023-01-22 02:46:49 +01:00 |
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sumatools
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svaba
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Merge pull request #175259 from trofi/workaround-fno-common-for-svaba
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2022-06-03 05:59:16 +00:00 |
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tandem-aligner
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tandem-aligner: init at unstable-2022-09-17
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2022-12-15 20:48:53 +01:00 |
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tebreak
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treewide: remove nativeBuildInputs that are in stdenv
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2022-04-16 21:46:46 +03:00 |
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treemix
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treemix: init at 1.13
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2022-09-05 06:55:03 +02:00 |
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trimal
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truvari
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python310Packages.levenshtein: don't use alias
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2023-01-09 06:09:31 -08:00 |
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varscan
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varscan: 2.4.4 -> 2.4.5
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2023-02-05 13:38:28 +00:00 |
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vcftools
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treewide: move pkg-config, autoreconfHook, intltool to nativeBuildInputs
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2022-09-26 17:53:26 +03:00 |
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veryfasttree
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veryfasttree: init at 3.1.1
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2022-11-22 20:45:45 +01:00 |
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whisper
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treewide: pkgs/applications: mark broken for darwin
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2022-05-29 10:56:04 +02:00 |
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xenomapper
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python3Packages.xenomapper: move to top-level
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2022-01-01 02:09:11 +01:00 |
