nixpkgs/pkgs/by-name/cw/cwltool/package.nix
aleksana 571c71e6f7 treewide: migrate packages to pkgs/by-name, take 1
We are migrating packages that meet below requirements:

1. using `callPackage`
2. called path is a directory
3. overriding set is empty (`{ }`)
4. not containing path expressions other than relative path (to
makenixpkgs-vet happy)
5. not referenced by nix files outside of the directory, other
than`pkgs/top-level/all-packages.nix`
6. not referencing nix files outside of the directory
7. not referencing `default.nix` (since it's changed to `package.nix`)
8. `outPath` doesn't change after migration

The tool is here: https://github.com/Aleksanaa/by-name-migrate.
2024-11-09 20:04:51 +08:00

97 lines
2.0 KiB
Nix

{
lib,
fetchFromGitHub,
git,
nodejs,
python3,
}:
python3.pkgs.buildPythonApplication rec {
pname = "cwltool";
version = "3.1.20241024121129";
pyproject = true;
src = fetchFromGitHub {
owner = "common-workflow-language";
repo = "cwltool";
rev = "refs/tags/${version}";
hash = "sha256-MocgfELgis9b+byeDU7mDQcXnLhaWBtvGbqm7MtRdf8=";
};
postPatch = ''
substituteInPlace setup.py \
--replace-fail "ruamel.yaml >= 0.16, < 0.19" "ruamel.yaml" \
--replace-fail "prov == 1.5.1" "prov" \
--replace-fail '"schema-salad >= 8.7, < 9",' '"schema-salad",' \
--replace-fail "PYTEST_RUNNER + " ""
substituteInPlace pyproject.toml \
--replace-fail "ruamel.yaml>=0.16.0,<0.18" "ruamel.yaml" \
--replace-fail "mypy==1.13.0" "mypy"
'';
nativeBuildInputs =
[
git
]
++ (with python3.pkgs; [
setuptools
setuptools-scm
]);
dependencies = with python3.pkgs; [
argcomplete
bagit
coloredlogs
cwl-utils
mypy
mypy-extensions
prov
psutil
pydot
rdflib
requests
ruamel-yaml
schema-salad
shellescape
spython
toml
types-psutil
types-requests
typing-extensions
];
nativeCheckInputs = with python3.pkgs; [
mock
nodejs
pytest-mock
pytest-httpserver
pytest-xdist
pytestCheckHook
];
disabledTests = [
"test_content_types"
"test_env_filtering"
"test_http_path_mapping"
"test_modification_date"
];
disabledTestPaths = [
"tests/test_udocker.py"
"tests/test_provenance.py"
];
pythonImportsCheck = [
"cwltool"
];
meta = with lib; {
description = "Common Workflow Language reference implementation";
homepage = "https://www.commonwl.org";
changelog = "https://github.com/common-workflow-language/cwltool/releases/tag/${version}";
license = with licenses; [ asl20 ];
maintainers = with maintainers; [ veprbl ];
mainProgram = "cwltool";
};
}