mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-22 21:53:32 +00:00
4a7f99d55d
Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
36 lines
1.0 KiB
Nix
36 lines
1.0 KiB
Nix
{ lib, stdenv, fetchzip, jdk11 }:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "igv";
|
|
version = "2.8.13";
|
|
src = fetchzip {
|
|
url = "https://data.broadinstitute.org/igv/projects/downloads/2.8/IGV_${version}.zip";
|
|
sha256 = "0sab478jq96iw3fv0560hrrj8qbh40r8m4ncypdb7991j9haxl09";
|
|
};
|
|
|
|
installPhase = ''
|
|
mkdir -pv $out/{share,bin}
|
|
cp -Rv * $out/share/
|
|
|
|
sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh
|
|
sed -i 's#java#${jdk11}/bin/java#g' $out/share/igv.sh
|
|
|
|
sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools
|
|
sed -i 's#java#${jdk11}/bin/java#g' $out/share/igvtools
|
|
|
|
ln -s $out/share/igv.sh $out/bin/igv
|
|
ln -s $out/share/igvtools $out/bin/igvtools
|
|
|
|
chmod +x $out/bin/igv
|
|
chmod +x $out/bin/igvtools
|
|
'';
|
|
|
|
meta = with lib; {
|
|
homepage = "https://www.broadinstitute.org/igv/";
|
|
description = "A visualization tool for interactive exploration of genomic datasets";
|
|
license = licenses.mit;
|
|
platforms = platforms.unix;
|
|
maintainers = [ maintainers.mimame ];
|
|
};
|
|
}
|