mirror of
https://github.com/NixOS/nixpkgs.git
synced 2025-01-09 14:33:22 +00:00
571c71e6f7
We are migrating packages that meet below requirements:
1. using `callPackage`
2. called path is a directory
3. overriding set is empty (`{ }`)
4. not containing path expressions other than relative path (to
makenixpkgs-vet happy)
5. not referenced by nix files outside of the directory, other
than`pkgs/top-level/all-packages.nix`
6. not referencing nix files outside of the directory
7. not referencing `default.nix` (since it's changed to `package.nix`)
8. `outPath` doesn't change after migration
The tool is here: https://github.com/Aleksanaa/by-name-migrate.
35 lines
945 B
Nix
35 lines
945 B
Nix
{ lib, stdenv, fetchurl, jre, makeWrapper }:
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stdenv.mkDerivation rec {
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pname = "macse";
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version = "2.03";
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src = fetchurl {
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url = "https://bioweb.supagro.inra.fr/${pname}/releases/${pname}_v${version}.jar";
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sha256 = "0jnjyz4f255glg37rawzdv4m6nfs7wfwc5dny7afvx4dz2sv4ssh";
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};
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nativeBuildInputs = [ makeWrapper ];
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dontUnpack = true;
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dontBuild = true;
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installPhase = ''
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runHook preInstall
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mkdir -p $out/share/java
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cp -s $src $out/share/java/macse.jar
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makeWrapper ${jre}/bin/java $out/bin/macse --add-flags "-jar $out/share/java/macse.jar"
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runHook postInstall
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'';
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meta = with lib; {
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description = "Multiple alignment of coding sequences";
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mainProgram = "macse";
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homepage = "https://bioweb.supagro.inra.fr/macse/";
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sourceProvenance = with sourceTypes; [ binaryBytecode ];
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license = licenses.gpl2;
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maintainers = [ maintainers.bzizou ];
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platforms = platforms.all;
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};
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}
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