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9bb3fccb5b
continuation of #109595 pkgconfig was aliased in 2018, however, it remained in all-packages.nix due to its wide usage. This cleans up the remaining references to pkgs.pkgsconfig and moves the entry to aliases.nix. python3Packages.pkgconfig remained unchanged because it's the canonical name of the upstream package on pypi.
119 lines
4.5 KiB
Nix
119 lines
4.5 KiB
Nix
{ lib, stdenv, fetchurl, bzip2, gfortran, libX11, libXmu, libXt, libjpeg, libpng
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, libtiff, ncurses, pango, pcre2, perl, readline, tcl, texLive, tk, xz, zlib
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, less, texinfo, graphviz, icu, pkg-config, bison, imake, which, jdk, blas, lapack
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, curl, Cocoa, Foundation, libobjc, libcxx, tzdata, fetchpatch
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, withRecommendedPackages ? true
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, enableStrictBarrier ? false
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# R as of writing does not support outputting both .so and .a files; it outputs:
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# --enable-R-static-lib conflicts with --enable-R-shlib and will be ignored
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, static ? false
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}:
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assert (!blas.isILP64) && (!lapack.isILP64);
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stdenv.mkDerivation rec {
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name = "R-4.0.3";
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src = fetchurl {
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url = "https://cran.r-project.org/src/base/R-4/${name}.tar.gz";
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sha256 = "03cypg2qf7v9mq9mr9alz9w5y9m5kdgwbc97bp26pyymg253m609";
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};
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dontUseImakeConfigure = true;
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buildInputs = [
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bzip2 gfortran libX11 libXmu libXt libXt libjpeg libpng libtiff ncurses
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pango pcre2 perl readline texLive xz zlib less texinfo graphviz icu
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pkg-config bison imake which blas lapack curl tcl tk jdk
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] ++ lib.optionals stdenv.isDarwin [ Cocoa Foundation libobjc libcxx ];
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patches = [
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./no-usr-local-search-paths.patch
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./fix-failing-test.patch
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];
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prePatch = lib.optionalString stdenv.isDarwin ''
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substituteInPlace configure --replace "-install_name libR.dylib" "-install_name $out/lib/R/lib/libR.dylib"
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'';
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dontDisableStatic = static;
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preConfigure = ''
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configureFlagsArray=(
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--disable-lto
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--with${lib.optionalString (!withRecommendedPackages) "out"}-recommended-packages
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--with-blas="-L${blas}/lib -lblas"
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--with-lapack="-L${lapack}/lib -llapack"
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--with-readline
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--with-tcltk --with-tcl-config="${tcl}/lib/tclConfig.sh" --with-tk-config="${tk}/lib/tkConfig.sh"
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--with-cairo
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--with-libpng
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--with-jpeglib
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--with-libtiff
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--with-ICU
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${lib.optionalString enableStrictBarrier "--enable-strict-barrier"}
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${if static then "--enable-R-static-lib" else "--enable-R-shlib"}
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AR=$(type -p ar)
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AWK=$(type -p gawk)
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CC=$(type -p cc)
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CXX=$(type -p c++)
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FC="${gfortran}/bin/gfortran" F77="${gfortran}/bin/gfortran"
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JAVA_HOME="${jdk}"
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RANLIB=$(type -p ranlib)
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R_SHELL="${stdenv.shell}"
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'' + lib.optionalString stdenv.isDarwin ''
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--disable-R-framework
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OBJC="clang"
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CPPFLAGS="-isystem ${libcxx}/include/c++/v1"
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LDFLAGS="-L${libcxx}/lib"
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'' + ''
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)
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echo >>etc/Renviron.in "TCLLIBPATH=${tk}/lib"
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echo >>etc/Renviron.in "TZDIR=${tzdata}/share/zoneinfo"
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'';
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installTargets = [ "install" "install-info" "install-pdf" ];
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# The store path to "which" is baked into src/library/base/R/unix/system.unix.R,
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# but Nix cannot detect it as a run-time dependency because the installed file
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# is compiled and compressed, which hides the store path.
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postFixup = "echo ${which} > $out/nix-support/undetected-runtime-dependencies";
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doCheck = true;
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preCheck = "export TZ=CET; bin/Rscript -e 'sessionInfo()'";
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enableParallelBuilding = true;
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setupHook = ./setup-hook.sh;
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meta = with lib; {
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homepage = "http://www.r-project.org/";
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description = "Free software environment for statistical computing and graphics";
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license = licenses.gpl2Plus;
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longDescription = ''
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GNU R is a language and environment for statistical computing and
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graphics that provides a wide variety of statistical (linear and
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nonlinear modelling, classical statistical tests, time-series
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analysis, classification, clustering, ...) and graphical
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techniques, and is highly extensible. One of R's strengths is the
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ease with which well-designed publication-quality plots can be
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produced, including mathematical symbols and formulae where
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needed. R is an integrated suite of software facilities for data
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manipulation, calculation and graphical display. It includes an
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effective data handling and storage facility, a suite of operators
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for calculations on arrays, in particular matrices, a large,
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coherent, integrated collection of intermediate tools for data
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analysis, graphical facilities for data analysis and display
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either on-screen or on hardcopy, and a well-developed, simple and
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effective programming language which includes conditionals, loops,
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user-defined recursive functions and input and output facilities.
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'';
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platforms = platforms.all;
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hydraPlatforms = platforms.linux;
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maintainers = with maintainers; [ peti ] ++ teams.sage.members;
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};
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}
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