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d2c4b5777b
Again: eb3f0aef43
#54306
Apparently the derivation needs both pkgconfigs
(it fails when missing either).
170 lines
5.6 KiB
Nix
170 lines
5.6 KiB
Nix
{ pkgs
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, withDoc ? false
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}:
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# Here sage and its dependencies are put together. Some dependencies may be pinned
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# as a last resort. Patching sage for compatibility with newer dependency versions
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# is always preferred, see `sage-src.nix` for that.
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let
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inherit (pkgs) fetchurl symlinkJoin callPackage nodePackages;
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# https://trac.sagemath.org/ticket/15980 for tracking of python3 support
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python = pkgs.python2.override {
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packageOverrides = self: super: {
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# python packages that appear unmaintained and were not accepted into the nixpkgs
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# tree because of that. These packages are only dependencies of the more-or-less
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# deprecated sagenb. However sagenb is still a default dependency and the doctests
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# depend on it.
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# See https://github.com/NixOS/nixpkgs/pull/38787 for a discussion.
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# The dependency on the sage notebook (and therefore these packages) will be
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# removed in the future:
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# https://trac.sagemath.org/ticket/25837
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flask-oldsessions = self.callPackage ./flask-oldsessions.nix {};
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flask-openid = self.callPackage ./flask-openid.nix {};
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python-openid = self.callPackage ./python-openid.nix {};
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sagenb = self.callPackage ./sagenb.nix {
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mathjax = nodePackages.mathjax;
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};
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# Package with a cyclic dependency with sage
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pybrial = self.callPackage ./pybrial.nix {};
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# `sagelib`, i.e. all of sage except some wrappers and runtime dependencies
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sagelib = self.callPackage ./sagelib.nix {
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inherit flint ecl arb;
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inherit sage-src pynac singular;
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linbox = pkgs.linbox.override { withSage = true; };
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pkg-config = pkgs.pkgconfig; # not to confuse with pythonPackages.pkgconfig
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};
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};
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};
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jupyter-kernel-definition = {
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displayName = "SageMath ${sage-src.version}";
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argv = [
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"${sage-with-env}/bin/sage" # FIXME which sage
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"--python"
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"-m"
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"sage.repl.ipython_kernel"
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"-f"
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"{connection_file}"
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];
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language = "sagemath";
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# just one 16x16 logo is available
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logo32 = "${sage-src}/doc/common/themes/sage/static/sageicon.png";
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logo64 = "${sage-src}/doc/common/themes/sage/static/sageicon.png";
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};
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# A bash script setting various environment variables to tell sage where
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# the files its looking fore are located. Also see `sage-env`.
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env-locations = callPackage ./env-locations.nix {
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inherit pari_data ecl;
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inherit singular;
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cysignals = python.pkgs.cysignals;
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three = nodePackages.three;
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mathjax = nodePackages.mathjax;
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};
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# The shell file that gets sourced on every sage start. Will also source
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# the env-locations file.
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sage-env = callPackage ./sage-env.nix {
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sagelib = python.pkgs.sagelib;
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inherit env-locations;
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inherit python ecl singular palp flint pynac pythonEnv;
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pkg-config = pkgs.pkgconfig; # not to confuse with pythonPackages.pkgconfig
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};
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# The documentation for sage, building it takes a lot of ram.
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sagedoc = callPackage ./sagedoc.nix {
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inherit sage-with-env;
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inherit python;
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};
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# sagelib with added wrappers and a dependency on sage-tests to make sure thet tests were run.
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sage-with-env = callPackage ./sage-with-env.nix {
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inherit pythonEnv;
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inherit sage-env;
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inherit pynac singular;
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pkg-config = pkgs.pkgconfig; # not to confuse with pythonPackages.pkgconfig
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three = nodePackages.three;
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};
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# Doesn't actually build anything, just runs sages testsuite. This is a
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# separate derivation to make it possible to re-run the tests without
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# rebuilding sagelib (which takes ~30 minutes).
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# Running the tests should take something in the order of 1h.
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sage-tests = callPackage ./sage-tests.nix {
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inherit sage-with-env;
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};
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sage-src = callPackage ./sage-src.nix {};
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pythonRuntimeDeps = with python.pkgs; [
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sagelib
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pybrial
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sagenb
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cvxopt
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networkx
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service-identity
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psutil
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sympy
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fpylll
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matplotlib
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tkinter # optional, as a matplotlib backend (use with `%matplotlib tk`)
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scipy
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ipywidgets
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rpy2
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sphinx
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typing
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pillow
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];
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pythonEnv = python.buildEnv.override {
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extraLibs = pythonRuntimeDeps;
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ignoreCollisions = true;
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} // { extraLibs = pythonRuntimeDeps; }; # make the libs accessible
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arb = pkgs.arb.override { inherit flint; };
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singular = pkgs.singular.override { inherit flint; };
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# *not* to confuse with the python package "pynac"
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pynac = pkgs.pynac.override { inherit singular flint; };
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# With openblas (64 bit), the tests fail the same way as when sage is build with
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# openblas instead of openblasCompat. Apparently other packages somehow use flints
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# blas when it is available. Alternative would be to override flint to use
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# openblasCompat.
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flint = pkgs.flint.override { withBlas = false; };
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# Multiple palp dimensions need to be available and sage expects them all to be
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# in the same folder.
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palp = symlinkJoin {
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name = "palp-${pkgs.palp.version}";
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paths = [
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(pkgs.palp.override { dimensions = 4; doSymlink = false; })
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(pkgs.palp.override { dimensions = 5; doSymlink = false; })
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(pkgs.palp.override { dimensions = 6; doSymlink = true; })
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(pkgs.palp.override { dimensions = 11; doSymlink = false; })
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];
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};
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# Sage expects those in the same directory.
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pari_data = symlinkJoin {
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name = "pari_data";
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paths = with pkgs; [
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pari-galdata
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pari-seadata-small
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];
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};
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# https://trac.sagemath.org/ticket/22191
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ecl = pkgs.ecl_16_1_2;
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in
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# A wrapper around sage that makes sure sage finds its docs (if they were build).
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callPackage ./sage.nix {
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inherit sage-tests sage-with-env sagedoc jupyter-kernel-definition;
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inherit withDoc;
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}
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