mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-28 16:43:58 +00:00
84 lines
1.6 KiB
Nix
84 lines
1.6 KiB
Nix
{
|
|
lib,
|
|
buildPythonPackage,
|
|
fetchFromGitHub,
|
|
setuptools,
|
|
formulaic,
|
|
click,
|
|
num2words,
|
|
numpy,
|
|
scipy,
|
|
pandas,
|
|
nibabel,
|
|
bids-validator,
|
|
sqlalchemy,
|
|
universal-pathlib,
|
|
pytestCheckHook,
|
|
versioneer,
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "pybids";
|
|
version = "0.18.1";
|
|
pyproject = true;
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "bids-standard";
|
|
repo = "pybids";
|
|
rev = version;
|
|
hash = "sha256-nSBc4vhkCdRo7CNBwvJreCiwoxJK6ztyI5gvcpzYZ/Y=";
|
|
};
|
|
|
|
postPatch = ''
|
|
substituteInPlace pyproject.toml \
|
|
--replace-fail 'dynamic = ["version"]' 'version = "${version}"'
|
|
'';
|
|
|
|
pythonRelaxDeps = [
|
|
"formulaic"
|
|
"sqlalchemy"
|
|
];
|
|
|
|
build-system = [
|
|
setuptools
|
|
versioneer
|
|
] ++ versioneer.optional-dependencies.toml;
|
|
|
|
dependencies = [
|
|
bids-validator
|
|
click
|
|
formulaic
|
|
nibabel
|
|
num2words
|
|
numpy
|
|
pandas
|
|
scipy
|
|
sqlalchemy
|
|
universal-pathlib
|
|
];
|
|
|
|
pythonImportsCheck = [ "bids" ];
|
|
|
|
nativeCheckInputs = [ pytestCheckHook ];
|
|
|
|
disabledTestPaths = [
|
|
# Could not connect to the endpoint URL
|
|
"src/bids/layout/tests/test_remote_bids.py"
|
|
];
|
|
|
|
disabledTests = [
|
|
# Regression associated with formulaic >= 0.6.0
|
|
# (see https://github.com/bids-standard/pybids/issues/1000)
|
|
"test_split"
|
|
];
|
|
|
|
meta = {
|
|
description = "Python tools for querying and manipulating BIDS datasets";
|
|
homepage = "https://github.com/bids-standard/pybids";
|
|
changelog = "https://github.com/bids-standard/pybids/blob/${version}/CHANGELOG.rst";
|
|
license = lib.licenses.mit;
|
|
maintainers = with lib.maintainers; [ wegank ];
|
|
mainProgram = "pybids";
|
|
};
|
|
}
|