mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-16 18:53:17 +00:00
4a7f99d55d
Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
49 lines
1001 B
Nix
49 lines
1001 B
Nix
{ gevent
|
|
, buildPythonPackage
|
|
, fetchFromGitHub
|
|
, hostname
|
|
, pytest
|
|
, python
|
|
, lib, stdenv
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "ruffus";
|
|
version = "2.8.4";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "cgat-developers";
|
|
repo = pname;
|
|
rev = "v${version}";
|
|
sha256 = "0fnzpchwwqsy5h18fs0n90s51w25n0dx0l74j0ka6lvhjl5sxn4c";
|
|
};
|
|
|
|
propagatedBuildInputs = [ gevent ];
|
|
|
|
checkInputs = [
|
|
hostname
|
|
pytest
|
|
];
|
|
|
|
# tests very flaky & hang often on darwin
|
|
doCheck = !stdenv.isDarwin;
|
|
# test files do indeed need to be executed separately
|
|
checkPhase = ''
|
|
pushd ruffus/test
|
|
rm test_with_logger.py # spawns 500 processes
|
|
for f in test_*.py ; do
|
|
HOME=$TMPDIR pytest -v --disable-warnings $f
|
|
done
|
|
popd
|
|
'';
|
|
pythonImportsCheck = [ "ruffus" ];
|
|
|
|
meta = with lib; {
|
|
description = "Light-weight Python Computational Pipeline Management";
|
|
homepage = "http://www.ruffus.org.uk";
|
|
license = licenses.mit;
|
|
maintainers = [ maintainers.kiwi ];
|
|
};
|
|
}
|
|
|