mirror of
https://github.com/NixOS/nixpkgs.git
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571c71e6f7
We are migrating packages that meet below requirements:
1. using `callPackage`
2. called path is a directory
3. overriding set is empty (`{ }`)
4. not containing path expressions other than relative path (to
makenixpkgs-vet happy)
5. not referenced by nix files outside of the directory, other
than`pkgs/top-level/all-packages.nix`
6. not referencing nix files outside of the directory
7. not referencing `default.nix` (since it's changed to `package.nix`)
8. `outPath` doesn't change after migration
The tool is here: https://github.com/Aleksanaa/by-name-migrate.
35 lines
829 B
Nix
35 lines
829 B
Nix
{ lib, stdenv, fetchFromGitHub, cmake, hdf5, boost }:
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stdenv.mkDerivation rec {
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pname = "minia";
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version = "3.2.1";
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src = fetchFromGitHub {
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owner = "GATB";
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repo = "minia";
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rev = "v${version}";
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sha256 = "0bmfrywixaaql898l0ixsfkhxjf2hb08ssnqzlzacfizxdp46siq";
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fetchSubmodules = true;
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};
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patches = [ ./no-bundle.patch ];
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env.NIX_CFLAGS_COMPILE = toString [ "-Wformat" ];
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nativeBuildInputs = [ cmake ];
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buildInputs = [ hdf5 boost ];
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prePatch = ''
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rm -rf thirdparty/gatb-core/gatb-core/thirdparty/{hdf5,boost}
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'';
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meta = with lib; {
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description = "Short read genome assembler";
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mainProgram = "minia";
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homepage = "https://github.com/GATB/minia";
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license = licenses.agpl3Plus;
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maintainers = with maintainers; [ jbedo ];
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platforms = [ "x86_64-linux" ];
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};
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}
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