mirror of
https://github.com/NixOS/nixpkgs.git
synced 2025-01-03 19:43:30 +00:00
571c71e6f7
We are migrating packages that meet below requirements:
1. using `callPackage`
2. called path is a directory
3. overriding set is empty (`{ }`)
4. not containing path expressions other than relative path (to
makenixpkgs-vet happy)
5. not referenced by nix files outside of the directory, other
than`pkgs/top-level/all-packages.nix`
6. not referencing nix files outside of the directory
7. not referencing `default.nix` (since it's changed to `package.nix`)
8. `outPath` doesn't change after migration
The tool is here: https://github.com/Aleksanaa/by-name-migrate.
43 lines
1.2 KiB
Nix
43 lines
1.2 KiB
Nix
{ lib, stdenv, fetchurl, unzip, llvmPackages }:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "bayescan";
|
|
version = "2.1";
|
|
|
|
src = fetchurl {
|
|
url = "http://cmpg.unibe.ch/software/BayeScan/files/BayeScan${version}.zip";
|
|
sha256 = "0ismima8j8z0zj9yc267rpf7z90w57b2pbqzjnayhc3ab8mcbfy6";
|
|
};
|
|
|
|
nativeBuildInputs = [ unzip ];
|
|
buildInputs = lib.optional stdenv.cc.isClang llvmPackages.openmp;
|
|
|
|
# Disable FORTIFY_SOURCE or the binary fails with "buffer overflow"
|
|
hardeningDisable = [ "fortify" ];
|
|
|
|
sourceRoot = "BayeScan${version}/source";
|
|
|
|
postPatch = ''
|
|
substituteInPlace Makefile --replace "-static" "" \
|
|
--replace "g++" "c++"
|
|
'';
|
|
|
|
installPhase = ''
|
|
mkdir -p $out/bin
|
|
mkdir -p $out/share/doc/bayescan
|
|
cp bayescan_${version} $out/bin
|
|
cp -r ../*pdf ../input_examples ../"R functions" $out/share/doc/bayescan
|
|
'';
|
|
|
|
env.NIX_CFLAGS_COMPILE = toString [ "-std=c++14" ];
|
|
|
|
meta = with lib; {
|
|
description = "Detecting natural selection from population-based genetic data";
|
|
homepage = "http://cmpg.unibe.ch/software/BayeScan";
|
|
license = licenses.gpl3;
|
|
maintainers = [ maintainers.bzizou ];
|
|
mainProgram = "bayescan_${version}";
|
|
platforms = lib.platforms.all;
|
|
};
|
|
}
|