mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-18 19:54:05 +00:00
117 lines
2.1 KiB
Nix
117 lines
2.1 KiB
Nix
{ lib
|
|
, buildPythonPackage
|
|
, fetchFromGitHub
|
|
, emcee
|
|
, h5netcdf
|
|
, matplotlib
|
|
, netcdf4
|
|
, numba
|
|
, numpy
|
|
, pandas
|
|
, setuptools
|
|
, cloudpickle
|
|
, pytestCheckHook
|
|
, scipy
|
|
, packaging
|
|
, pythonOlder
|
|
, xarray
|
|
, xarray-einstats
|
|
, zarr
|
|
, ffmpeg
|
|
, h5py
|
|
, jaxlib
|
|
, torchvision
|
|
, jax
|
|
# , pymc3 (circular dependency)
|
|
, pyro-ppl
|
|
#, pystan (not packaged)
|
|
, numpyro
|
|
, bokeh
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "arviz";
|
|
version = "0.17.0";
|
|
pyproject = true;
|
|
|
|
disabled = pythonOlder "3.9";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "arviz-devs";
|
|
repo = "arviz";
|
|
rev = "refs/tags/v${version}";
|
|
hash = "sha256-DqVwbiNJHdRxK3Ppfa6sqPJzDqMaj1mtlAJHFq09u2Y=";
|
|
};
|
|
|
|
propagatedBuildInputs = [
|
|
h5netcdf
|
|
matplotlib
|
|
netcdf4
|
|
numpy
|
|
packaging
|
|
pandas
|
|
scipy
|
|
setuptools
|
|
xarray
|
|
xarray-einstats
|
|
];
|
|
|
|
nativeCheckInputs = [
|
|
cloudpickle
|
|
emcee
|
|
ffmpeg
|
|
h5py
|
|
jax
|
|
jaxlib
|
|
numba
|
|
numpyro
|
|
# pymc3 (circular dependency)
|
|
pyro-ppl
|
|
# pystan (not packaged)
|
|
pytestCheckHook
|
|
torchvision
|
|
zarr
|
|
bokeh
|
|
];
|
|
|
|
preCheck = ''
|
|
export HOME=$(mktemp -d);
|
|
'';
|
|
|
|
pytestFlagsArray = [
|
|
"arviz/tests/base_tests/"
|
|
];
|
|
|
|
disabledTests = [
|
|
# Tests require network access
|
|
"test_plot_ppc_transposed"
|
|
"test_plot_separation"
|
|
"test_plot_trace_legend"
|
|
"test_cov"
|
|
# countourpy is not available at the moment
|
|
"test_plot_kde"
|
|
"test_plot_kde_2d"
|
|
"test_plot_pair"
|
|
# Array mismatch
|
|
"test_plot_ts"
|
|
# The following two tests fail in a common venv-based setup.
|
|
# An issue has been opened upstream: https://github.com/arviz-devs/arviz/issues/2282
|
|
"test_plot_ppc_discrete"
|
|
"test_plot_ppc_discrete_save_animation"
|
|
# Assertion error
|
|
"test_data_zarr"
|
|
];
|
|
|
|
pythonImportsCheck = [
|
|
"arviz"
|
|
];
|
|
|
|
meta = with lib; {
|
|
description = "Library for exploratory analysis of Bayesian models";
|
|
homepage = "https://arviz-devs.github.io/arviz/";
|
|
changelog = "https://github.com/arviz-devs/arviz/blob/v${version}/CHANGELOG.md";
|
|
license = licenses.asl20;
|
|
maintainers = with maintainers; [ omnipotententity ];
|
|
};
|
|
}
|