mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-01 19:33:03 +00:00
134 lines
4.0 KiB
Nix
134 lines
4.0 KiB
Nix
{ lib
|
|
, stdenv
|
|
, fetchFromGitHub
|
|
, cmake
|
|
, removeReferencesTo
|
|
, cppSupport ? true
|
|
, fortranSupport ? false
|
|
, fortran
|
|
, zlibSupport ? true
|
|
, zlib
|
|
, szipSupport ? false
|
|
, szip
|
|
, mpiSupport ? false
|
|
, mpi
|
|
, enableShared ? !stdenv.hostPlatform.isStatic
|
|
, enableStatic ? stdenv.hostPlatform.isStatic
|
|
, javaSupport ? false
|
|
, jdk
|
|
, usev110Api ? false
|
|
, threadsafe ? false
|
|
, python3
|
|
}:
|
|
|
|
# cpp and mpi options are mutually exclusive
|
|
# (--enable-unsupported could be used to force the build)
|
|
assert !cppSupport || !mpiSupport;
|
|
|
|
let inherit (lib) optional optionals; in
|
|
|
|
stdenv.mkDerivation rec {
|
|
version = "1.14.4.3";
|
|
pname = "hdf5"
|
|
+ lib.optionalString cppSupport "-cpp"
|
|
+ lib.optionalString fortranSupport "-fortran"
|
|
+ lib.optionalString mpiSupport "-mpi"
|
|
+ lib.optionalString threadsafe "-threadsafe";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "HDFGroup";
|
|
repo = "hdf5";
|
|
rev = "hdf5_${version}";
|
|
hash = "sha256-lvz3x04SS0oZmUn/BIxQEHnugaDOws46kfT3NAw7Hos=";
|
|
};
|
|
|
|
passthru = {
|
|
inherit
|
|
cppSupport
|
|
fortranSupport
|
|
fortran
|
|
zlibSupport
|
|
zlib
|
|
szipSupport
|
|
szip
|
|
mpiSupport
|
|
mpi
|
|
;
|
|
};
|
|
|
|
outputs = [ "out" "dev" "bin" ];
|
|
|
|
nativeBuildInputs = [ removeReferencesTo cmake ]
|
|
++ optional fortranSupport fortran;
|
|
|
|
buildInputs = optional fortranSupport fortran
|
|
++ optional szipSupport szip
|
|
++ optional javaSupport jdk;
|
|
|
|
propagatedBuildInputs = optional zlibSupport zlib
|
|
++ optional mpiSupport mpi;
|
|
|
|
cmakeFlags = [
|
|
"-DHDF5_INSTALL_CMAKE_DIR=${placeholder "dev"}/lib/cmake"
|
|
"-DBUILD_STATIC_LIBS=${lib.boolToString enableStatic}"
|
|
] ++ lib.optional stdenv.isDarwin "-DHDF5_BUILD_WITH_INSTALL_NAME=ON"
|
|
++ lib.optional cppSupport "-DHDF5_BUILD_CPP_LIB=ON"
|
|
++ lib.optional fortranSupport "-DHDF5_BUILD_FORTRAN=ON"
|
|
++ lib.optional szipSupport "-DHDF5_ENABLE_SZIP_SUPPORT=ON"
|
|
++ lib.optionals mpiSupport [ "-DHDF5_ENABLE_PARALLEL=ON" ]
|
|
++ lib.optional enableShared "-DBUILD_SHARED_LIBS=ON"
|
|
++ lib.optional javaSupport "-DHDF5_BUILD_JAVA=ON"
|
|
++ lib.optional usev110Api "-DDEFAULT_API_VERSION=v110"
|
|
++ lib.optionals threadsafe [ "-DDHDF5_ENABLE_THREADSAFE:BOOL=ON" "-DHDF5_BUILD_HL_LIB=OFF" ]
|
|
# broken in nixpkgs since around 1.14.3 -> 1.14.4.3
|
|
# https://github.com/HDFGroup/hdf5/issues/4208#issuecomment-2098698567
|
|
++ lib.optional (stdenv.isDarwin && stdenv.isx86_64) "-DHDF5_ENABLE_NONSTANDARD_FEATURE_FLOAT16=OFF"
|
|
;
|
|
|
|
postInstall = ''
|
|
find "$out" -type f -exec remove-references-to -t ${stdenv.cc} '{}' +
|
|
moveToOutput 'bin/' "''${!outputBin}"
|
|
moveToOutput 'bin/h5cc' "''${!outputDev}"
|
|
moveToOutput 'bin/h5c++' "''${!outputDev}"
|
|
moveToOutput 'bin/h5fc' "''${!outputDev}"
|
|
moveToOutput 'bin/h5pcc' "''${!outputDev}"
|
|
moveToOutput 'bin/h5hlcc' "''${!outputDev}"
|
|
moveToOutput 'bin/h5hlc++' "''${!outputDev}"
|
|
'' + lib.optionalString enableShared
|
|
# The shared build creates binaries with -shared suffixes,
|
|
# so we remove these suffixes.
|
|
''
|
|
pushd ''${!outputBin}/bin
|
|
for file in *-shared; do
|
|
mv "$file" "''${file%%-shared}"
|
|
done
|
|
popd
|
|
'' + lib.optionalString fortranSupport
|
|
''
|
|
mv $out/mod/shared $dev/include
|
|
rm -r $out/mod
|
|
|
|
find "$out" -type f -exec remove-references-to -t ${fortran} '{}' +
|
|
'';
|
|
|
|
enableParallelBuilding = true;
|
|
|
|
passthru.tests = {
|
|
inherit (python3.pkgs) h5py;
|
|
};
|
|
|
|
meta = with lib; {
|
|
description = "Data model, library, and file format for storing and managing data";
|
|
longDescription = ''
|
|
HDF5 supports an unlimited variety of datatypes, and is designed for flexible and efficient
|
|
I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing
|
|
applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and
|
|
applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
|
|
'';
|
|
license = licenses.bsd3; # Lawrence Berkeley National Labs BSD 3-Clause variant
|
|
maintainers = [ maintainers.markuskowa ];
|
|
homepage = "https://www.hdfgroup.org/HDF5/";
|
|
platforms = platforms.unix;
|
|
};
|
|
}
|