mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-20 20:53:48 +00:00
65 lines
1.2 KiB
Nix
65 lines
1.2 KiB
Nix
{ stdenv
|
|
, lib
|
|
, buildPythonPackage
|
|
, fetchFromGitHub
|
|
, pytestCheckHook
|
|
, pythonOlder
|
|
, deprecated
|
|
, humanize
|
|
, matplotlib
|
|
, nibabel
|
|
, numpy
|
|
, parameterized
|
|
, scipy
|
|
, simpleitk
|
|
, torch
|
|
, tqdm
|
|
, typer
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "torchio";
|
|
version = "0.18.90";
|
|
format = "pyproject";
|
|
disabled = pythonOlder "3.7";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "fepegar";
|
|
repo = pname;
|
|
rev = "refs/tags/v${version}";
|
|
hash = "sha256-h8cvNhOkjMMbQ6Nry8FKtwnK+yhRYRGjXi/xp0i5yyY=";
|
|
};
|
|
|
|
propagatedBuildInputs = [
|
|
deprecated
|
|
humanize
|
|
nibabel
|
|
numpy
|
|
scipy
|
|
simpleitk
|
|
torch
|
|
tqdm
|
|
typer
|
|
] ++ typer.passthru.optional-dependencies.all;
|
|
|
|
nativeCheckInputs = [ pytestCheckHook matplotlib parameterized ];
|
|
disabledTests = [
|
|
# tries to download models:
|
|
"test_load_all"
|
|
] ++ lib.optionals stdenv.isAarch64 [
|
|
# RuntimeError: DataLoader worker (pid(s) <...>) exited unexpectedly
|
|
"test_queue_multiprocessing"
|
|
];
|
|
pythonImportsCheck = [
|
|
"torchio"
|
|
"torchio.data"
|
|
];
|
|
|
|
meta = with lib; {
|
|
description = "Medical imaging toolkit for deep learning";
|
|
homepage = "http://www.torchio.org/";
|
|
license = licenses.asl20;
|
|
maintainers = [ maintainers.bcdarwin ];
|
|
};
|
|
}
|