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33afbf39f6
checkInputs used to be added to nativeBuildInputs. Now we have nativeCheckInputs to do that instead. Doing this treewide change allows to keep hashes identical to before the introduction of nativeCheckInputs.
65 lines
1.8 KiB
Nix
65 lines
1.8 KiB
Nix
{ lib
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, buildPythonPackage
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, fetchpatch
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, cython
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, numpy
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, pytestCheckHook
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, scipy
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, scikit-learn
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, fetchPypi
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, joblib
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, six
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, pythonRelaxDepsHook
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}:
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buildPythonPackage rec {
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pname = "hdbscan";
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version = "0.8.28";
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src = fetchPypi {
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inherit pname version;
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sha256 = "sha256-7tr3Hy87vt/Ew42hrUiXRUzl69R5LhponJecKFPtwFo=";
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};
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patches = [
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# should be included in next release
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(fetchpatch {
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name = "joblib-1.2.0-compat.patch";
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url = "https://github.com/scikit-learn-contrib/hdbscan/commit/d829c639923f6866e1917e46ddbde45b513913f3.patch";
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excludes = [
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"docs/basic_hdbscan.rst"
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"docs/how_hdbscan_works.rst"
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];
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sha256 = "sha256-t0D4OsHEcMwmBZM8Mk1N0uAKi6ra+TOzEks9/efsvWI=";
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})
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];
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pythonRemoveDeps = [ "cython" ];
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nativeBuildInputs = [ pythonRelaxDepsHook cython ];
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propagatedBuildInputs = [ numpy scipy scikit-learn joblib six ];
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preCheck = ''
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cd hdbscan/tests
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rm __init__.py
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'';
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nativeCheckInputs = [ pytestCheckHook ];
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disabledTests = [
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# known flaky tests: https://github.com/scikit-learn-contrib/hdbscan/issues/420
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"test_mem_vec_diff_clusters"
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"test_all_points_mem_vec_diff_clusters"
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"test_approx_predict_diff_clusters"
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# another flaky test https://github.com/scikit-learn-contrib/hdbscan/issues/421
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"test_hdbscan_boruvka_balltree_matches"
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# more flaky tests https://github.com/scikit-learn-contrib/hdbscan/issues/570
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"test_hdbscan_boruvka_balltree"
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"test_hdbscan_best_balltree_metric"
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];
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pythonImportsCheck = [ "hdbscan" ];
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meta = with lib; {
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description = "Hierarchical Density-Based Spatial Clustering of Applications with Noise, a clustering algorithm with a scikit-learn compatible API";
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homepage = "https://github.com/scikit-learn-contrib/hdbscan";
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license = licenses.bsd3;
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maintainers = with maintainers; [ ixxie ];
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};
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}
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