mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-11-30 10:53:11 +00:00
50788d2fb0
Upstream changes:
singularity 3.8.7 (the legacy) -> apptainer 1.1.3 (the renamed) / singularity 3.10.4 (Sylabs's fork)
Build process:
* Share between different sources
* Fix the sed regexp to make defaultPath patch work
* allowGoReference is now true
* Provied input parameter removeCompat (default to false)
that removes the compatible "*singularity*" symbolic links
and related autocompletion files when projectName != "singularity"
* Change localstatedir to /var/lib
* Format with nixpkgs-fmt
* Fix the defaultPath patching
and use it instead of the `<executable> path` config directive
deprecated in Apptainer
* Provide dependencies for new functionalities such as
squashfuse (unprivileged squashfs mount)
* Provide an attribute `defaultPathInputs` to override
prefix of container runtime default PATH
NixOS module programs.singularity:
* Allow users to specify packages
* Place related directories to /var/lib
* Format with nixpkgs-fmt
singularity-tools:
* Allow users to specify packages
* Place related directories to /var/lib when building images in VM
123 lines
3.2 KiB
Nix
123 lines
3.2 KiB
Nix
{ runCommand
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, lib
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, stdenv
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, storeDir ? builtins.storeDir
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, writeScript
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, singularity
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, writeReferencesToFile
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, bash
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, vmTools
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, gawk
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, util-linux
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, runtimeShell
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, e2fsprogs
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}:
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rec {
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shellScript = name: text:
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writeScript name ''
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#!${runtimeShell}
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set -e
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${text}
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'';
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mkLayer =
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{ name
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, contents ? [ ]
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# May be "apptainer" instead of "singularity"
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, projectName ? (singularity.projectName or "singularity")
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}:
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runCommand "${projectName}-layer-${name}"
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{
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inherit contents;
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} ''
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mkdir $out
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for f in $contents ; do
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cp -ra $f $out/
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done
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'';
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buildImage =
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let
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defaultSingularity = singularity;
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in
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{ name
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, contents ? [ ]
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, diskSize ? 1024
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, runScript ? "#!${stdenv.shell}\nexec /bin/sh"
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, runAsRoot ? null
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, memSize ? 512
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, singularity ? defaultSingularity
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}:
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let
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projectName = singularity.projectName or "singularity";
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layer = mkLayer {
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inherit name;
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contents = contents ++ [ bash runScriptFile ];
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inherit projectName;
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};
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runAsRootFile = shellScript "run-as-root.sh" runAsRoot;
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runScriptFile = shellScript "run-script.sh" runScript;
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result = vmTools.runInLinuxVM (
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runCommand "${projectName}-image-${name}.img"
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{
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buildInputs = [ singularity e2fsprogs util-linux gawk ];
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layerClosure = writeReferencesToFile layer;
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preVM = vmTools.createEmptyImage {
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size = diskSize;
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fullName = "${projectName}-run-disk";
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};
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inherit memSize;
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}
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''
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rm -rf $out
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mkdir disk
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mkfs -t ext3 -b 4096 /dev/${vmTools.hd}
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mount /dev/${vmTools.hd} disk
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mkdir -p disk/img
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cd disk/img
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mkdir proc sys dev
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# Run root script
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${lib.optionalString (runAsRoot != null) ''
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mkdir -p ./${storeDir}
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mount --rbind ${storeDir} ./${storeDir}
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unshare -imnpuf --mount-proc chroot ./ ${runAsRootFile}
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umount -R ./${storeDir}
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''}
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# Build /bin and copy across closure
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mkdir -p bin ./${builtins.storeDir}
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for f in $(cat $layerClosure) ; do
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cp -ar $f ./$f
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done
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for c in ${toString contents} ; do
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for f in $c/bin/* ; do
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if [ ! -e bin/$(basename $f) ] ; then
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ln -s $f bin/
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fi
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done
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done
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# Create runScript and link shell
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if [ ! -e bin/sh ]; then
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ln -s ${runtimeShell} bin/sh
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fi
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mkdir -p .${projectName}.d
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ln -s ${runScriptFile} .${projectName}.d/runscript
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# Fill out .${projectName}.d
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mkdir -p .${projectName}.d/env
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touch .${projectName}.d/env/94-appsbase.sh
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cd ..
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mkdir -p /var/lib/${projectName}/mnt/{container,final,overlay,session,source}
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echo "root:x:0:0:System administrator:/root:/bin/sh" > /etc/passwd
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echo > /etc/resolv.conf
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TMPDIR=$(pwd -P) ${projectName} build $out ./img
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'');
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in
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result;
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}
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