nixpkgs/pkgs/applications/science/biology
Sergei Trofimovich 75f093fed6 octopus-caller: fix gcc-13 build failure (drop -Werror)
Without the change the build on `master` fails as
https://hydra.nixos.org/build/249090788:

    /build/source/src/config/option_collation.cpp: In function 'auto octopus::options::make_variant_generator_builder(const OptionMap&, boost::optional<const octopus::ReadSetProfile&>)':
    /build/source/src/config/option_collation.cpp:1298: error: redundant move in initialization [-Werror=redundant-move]
     1298 |                 throw ConflictingSourceVariantFile {std::move(source_path), *output_path};
          |

Blanket `-Werror` frequently causes build failures unless upstream is
quick at addressing build failures.
2024-02-20 09:39:27 +00:00
..
angsd
ants ants: 2.5.0 -> 2.5.1 2024-01-26 01:12:12 +01:00
aragorn
astral
bamtools
bayescan
bcftools bcftools: 1.18 -> 1.19 2023-12-13 06:48:21 +00:00
bedops
bedtools bedtools: 2.31.0 -> 2.31.1 2023-11-09 06:18:08 +00:00
bftools
bioawk
blast
bowtie
bowtie2 bowtie2: 2.5.2 -> 2.5.3 2024-01-18 01:41:31 +00:00
bppsuite
bwa
bwa-mem2
cd-hit
clustal-omega
cmtk
conglomerate
dcm2niix dcm2niix: 1.0.20211006 -> 1.0.20230411 2024-02-07 16:11:03 +10:00
deeptools deeptools: fix build 2024-01-28 12:17:37 -08:00
delly delly: 1.1.8 -> 1.2.6 2023-12-22 18:36:25 +00:00
diamond
dssp dssp: 4.4.4.1 -> 4.4.5 2023-11-24 22:34:06 +09:00
ecopcr
eggnog-mapper eggnog-mapper: 2.1.10 -> 2.1.12 2024-01-18 19:17:47 +00:00
emboss
est-sfs
exonerate
EZminc
fastp
febio-studio
flywheel-cli treewide: s_targetPlatform_hostPlatform_ in non-compiler packages 2023-11-17 08:07:34 +00:00
freebayes
gatk gatk: 4.4.0.0 -> 4.5.0.0 2023-12-15 04:20:42 +00:00
genmap
hh-suite hh-suite: fix build on GCC 13 2024-02-08 21:54:47 +00:00
hisat2
hmmer
igv igv: use jdk17 instead of jdk11 (#285521) 2024-02-01 14:42:34 +01:00
inormalize inormalize: fix build on darwin 2024-01-21 23:26:55 +01:00
iqtree
itsx
iv
jbrowse
kalign kalign: 3.3.5 -> 3.4.0 2023-12-11 06:26:11 +00:00
kallisto kallisto: 0.50.0 -> 0.50.1 2023-11-02 11:02:00 +00:00
kent perlPackages.BioBigFile: Addressing reviewer change 2023-11-21 23:16:39 +01:00
kssd kssd: enable aarch64-linux support & tests 2023-11-03 19:34:28 +09:00
last last: 1540 -> 1541 2024-02-14 15:51:25 +00:00
macs2
macse
mafft
manta
megahit megahit: fir gcc-13 build failure 2024-02-10 10:26:43 +00:00
meme-suite
messer-slim messer-slim: 4.0.1 -> 4.1 2023-12-16 20:13:33 +00:00
migrate
minc-tools
minc-widgets
minia
minimap2
mmseqs2
mni_autoreg
mrbayes
mrtrix
muscle
N3 n3: fix build on darwin 2024-01-21 23:22:54 +01:00
nest
neuron
niftyreg
niftyseg
obitools treewide: replace lib/${python.libPrefix}/site-packages with its shorthand ${python.sitePackages} 2024-01-30 19:56:57 +01:00
octopus octopus-caller: fix gcc-13 build failure (drop -Werror) 2024-02-20 09:39:27 +00:00
paml
picard-tools picard-tools: 3.1.0 -> 3.1.1 2023-11-15 14:35:32 +00:00
platypus
plink-ng
poretools poretools: mark as broken 2023-12-11 04:28:39 +00:00
prodigal
quast treewide: change pythonForBuild to pythonOnBuildForHost 2023-11-05 17:42:12 -08:00
raxml
repseek
sambamba
samblaster
samtools samtools: 1.19 -> 1.19.2 2024-01-28 12:24:10 -08:00
seaview
seqkit seqkit: 2.6.1 -> 2.7.0 2024-02-01 04:24:02 +00:00
seqtk
snpeff
somatic-sniper
sortmerna
spades SPAdes: fix build 2024-01-20 15:28:48 -03:00
sratoolkit
stacks stacks: 2.65 -> 2.66 2024-01-24 07:54:36 +00:00
star
strelka strelka: add aarch64-linux support 2023-12-11 13:37:17 +01:00
subread
sumatools
svaba svaba: fix gcc-13 build failure 2024-02-11 09:59:19 +00:00
tandem-aligner
tebreak
treemix
trf
trimal
trimmomatic trimmomatic: make deterministic and clean up 2024-01-04 21:45:11 +01:00
truvari
varscan
vcftools
veryfasttree
whisper whisper: enable parallel building 2024-01-25 19:27:12 +00:00
xenomapper