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angsd
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pkgs/applications: replace "${version}" with version
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2023-07-02 14:39:50 -04:00 |
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ants
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ants: 2.4.3 -> 2.4.4
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2023-05-02 12:29:21 -04:00 |
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aragorn
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aragorn: fix format
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2023-06-08 18:42:29 +09:00 |
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astral
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treewide: set sourceProvenance for packages containing downloaded jars
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2022-06-04 19:47:57 +01:00 |
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bayescan
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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bcftools
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bcftools: 1.16 -> 1.17
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2023-02-25 23:02:27 +00:00 |
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bedops
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bedops: fix build on darwin
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2023-04-24 22:11:47 +09:00 |
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bedtools
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bedtools: 2.30.0 -> 2.31.0
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2023-04-29 03:05:55 +00:00 |
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bftools
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treewide: set sourceProvenance for packages containing downloaded jars
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2022-06-04 19:47:57 +01:00 |
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blast
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blast: 2.13.0 -> 2.14.0
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2023-05-26 00:23:49 +00:00 |
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bowtie
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treewide:replace http by https when https is a permanent redirection
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2023-02-19 21:47:59 +01:00 |
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bowtie2
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bowtie2: 2.4.5 -> 2.5.1
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2023-01-21 21:19:00 +00:00 |
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bppsuite
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bppsuite: fix homepage
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2023-06-15 12:18:11 -04:00 |
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bwa
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bwa: add runHook
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2023-05-15 16:13:49 +09:00 |
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cd-hit
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clustal-omega
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treewide: add meta.mainProgram to many packages
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2022-04-14 10:24:01 -07:00 |
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cmtk
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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conglomerate
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dcm2niix
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treewide: Rename libyamlcpp* to yaml-cpp*
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2023-01-31 16:22:54 +01:00 |
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deeptools
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treewide: switch to nativeCheckInputs
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2023-01-21 12:00:00 +00:00 |
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delly
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delly: 1.1.5 -> 1.1.6
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2022-11-08 18:21:37 +00:00 |
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diamond
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diamond: 2.1.7 -> 2.1.8
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2023-06-25 04:35:30 +00:00 |
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dssp
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dssp: fix format
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2023-07-01 16:40:29 +09:00 |
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ecopcr
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ecopcr: 0.8.0 -> 1.0.1
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2022-12-08 04:35:53 +01:00 |
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eggnog-mapper
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eggnog-mapper: 2.1.9 -> 2.1.10
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2023-02-11 08:43:59 +00:00 |
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emboss
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treewide: replace http by https when https is a permanent redirection
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2023-01-22 02:46:49 +01:00 |
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est-sfs
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exonerate
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EZminc
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EZminc: itk4 -> itk (formally; package is broken)
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2022-09-04 13:36:24 -04:00 |
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fastp
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fastp: 0.23.3 -> 0.23.4
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2023-06-04 03:21:21 +00:00 |
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febio-studio
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treewide: make ffmpeg_4-dependant packages depend on ffmpeg_4
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2023-03-13 16:42:22 -06:00 |
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flywheel-cli
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treewide/applications: add sourceType binaryNativeCode for many packages
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2022-06-23 18:38:19 +01:00 |
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freebayes
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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gatk
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gatk: 4.3.0.0 -> 4.4.0.0
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2023-03-18 01:10:14 +00:00 |
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genmap
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treewide: switch to nativeCheckInputs
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2023-01-21 12:00:00 +00:00 |
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hh-suite
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hh-suite: init at 3.3.0
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2023-04-19 10:32:35 +09:00 |
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hisat2
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hmmer
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igv
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igv: 2.16.0 -> 2.16.1
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2023-05-31 13:33:15 +00:00 |
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inormalize
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inormalize/minc-widgets/gimp-plugins: use pname & version
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2023-02-12 22:21:44 +01:00 |
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iqtree
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iqtree: 2.2.2.4 -> 2.2.2.6
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2023-05-30 01:13:17 +00:00 |
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itsx
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iv
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jbrowse
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jbrowse: init at 2.5.0
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2023-05-12 11:24:26 -07:00 |
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kalign
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kalign: init at 3.3.5
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2023-06-14 21:05:58 +09:00 |
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kallisto
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kent
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kent: package headers too.
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2023-05-06 19:48:14 +02:00 |
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kssd
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kssd: pull upstream fix for -fno-common tollchains
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2022-05-21 11:22:53 +01:00 |
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last
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last: 1453 -> 1456
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2023-06-25 11:01:07 -03:00 |
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macs2
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macs2: rename from MACS2
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2023-06-13 21:47:47 +00:00 |
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macse
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treewide: set sourceProvenance for packages containing downloaded jars
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2022-06-04 19:47:57 +01:00 |
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mafft
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mafft: 7.515 -> 7.520
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2023-04-12 13:28:24 +09:00 |
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manta
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megahit
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treewide: optional -> optionals where the argument is a list
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2022-10-10 15:40:21 +03:00 |
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meme-suite
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pkgs.applications: remove unused args
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2022-10-12 16:00:16 +02:00 |
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messer-slim
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messer-slim: 4.0 -> 4.0.1
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2022-09-15 22:25:51 +00:00 |
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migrate
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treewide: pkgs/applications: mark broken for darwin
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2022-05-29 10:56:04 +02:00 |
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minc-tools
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minc-widgets
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inormalize/minc-widgets/gimp-plugins: use pname & version
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2023-02-12 22:21:44 +01:00 |
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minia
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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minimap2
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minimap2: 2.25 -> 2.26
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2023-05-03 19:38:48 +00:00 |
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mmseqs2
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mmseqs2: init at 14-7e284
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2022-10-31 23:49:10 +09:00 |
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mni_autoreg
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mni_autoreg: unstable-2017-02-22 -> unstable-2022-05-20
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2022-07-26 16:03:12 -04:00 |
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mosdepth
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mosdepth: 0.3.3 -> 0.3.4
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2023-06-28 10:52:42 +00:00 |
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mrbayes
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mrtrix
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treewide: switch to nativeCheckInputs
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2023-01-21 12:00:00 +00:00 |
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muscle
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pkgs/applications: replace "${version}" with version
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2023-07-02 14:39:50 -04:00 |
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N3
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nest
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nest: specify license
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2023-03-18 11:23:52 +01:00 |
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neuron
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treewide: fix lints
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2023-03-11 00:55:17 +02:00 |
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niftyreg
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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niftyseg
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obitools
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octopus
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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paml
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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picard-tools
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picard-tools: 2.27.5 -> 3.0.0
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2023-03-01 14:43:38 +00:00 |
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platypus
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plink-ng
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treewide: use optionalString
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2023-02-13 21:52:34 +01:00 |
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poretools
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prodigal
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quast
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treewide: python{ => .pythonForBuild}.interpreter
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2023-02-26 20:26:17 +00:00 |
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raxml
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raxml-mpi: remove appendToName to have a consistent package name for repology
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2022-02-28 12:46:15 +01:00 |
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repseek
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sambamba
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sambamba: 0.8.2 -> 1.0.0
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2023-01-22 13:54:41 +00:00 |
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samblaster
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samtools
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Samtools: 1.13 -> 1.17
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2023-04-12 12:00:25 +02:00 |
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seaview
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treewide:replace http by https when https is a permanent redirection
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2023-02-19 21:47:59 +01:00 |
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seqkit
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seqkit: 2.3.1 -> 2.4.0
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2023-03-21 10:45:22 +00:00 |
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seqtk
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seqtk: 1.3 -> 1.4
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2023-05-28 06:48:51 +00:00 |
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snpeff
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treewide: replace http by https when https is a permanent redirection
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2023-01-22 02:46:49 +01:00 |
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somatic-sniper
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sortmerna
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pkgs.applications: remove unused args
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2022-10-12 16:00:16 +02:00 |
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spades
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Merge pull request #184694 from r-ryantm/auto-update/SPAdes
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2022-08-23 20:21:42 +02:00 |
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sratoolkit
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sratoolkit: init at 2.11.3
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2022-11-21 20:27:28 +01:00 |
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stacks
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stacks: 2.60 -> 2.62
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2023-02-06 21:36:49 +01:00 |
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star
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star: 2.7.10a -> 2.7.10b
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2023-01-14 06:06:52 +00:00 |
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strelka
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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subread
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subread: 2.0.5 -> 2.0.6
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2023-05-10 22:30:35 +10:00 |
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sumatools
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svaba
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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tandem-aligner
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tandem-aligner: add changelog to meta
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2023-04-19 21:23:21 +09:00 |
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tebreak
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treewide: remove nativeBuildInputs that are in stdenv
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2022-04-16 21:46:46 +03:00 |
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treemix
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treemix: init at 1.13
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2022-09-05 06:55:03 +02:00 |
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trf
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trf: init at 4.09.1
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2023-03-19 22:25:42 +09:00 |
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trimal
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truvari
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truvari: add patches to fix truvari anno
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2023-05-15 10:01:38 +09:00 |
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varscan
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varscan: 2.4.5 -> 2.4.6
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2023-04-05 14:55:31 +00:00 |
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vcftools
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treewide: move pkg-config, autoreconfHook, intltool to nativeBuildInputs
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2022-09-26 17:53:26 +03:00 |
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veryfasttree
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veryfasttree: fix pname
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2023-01-28 04:20:00 +00:00 |
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whisper
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treewide: pkgs/applications: mark broken for darwin
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2022-05-29 10:56:04 +02:00 |
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xenomapper
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