nixpkgs/pkgs/by-name/su/subread/package.nix
aleksana 571c71e6f7 treewide: migrate packages to pkgs/by-name, take 1
We are migrating packages that meet below requirements:

1. using `callPackage`
2. called path is a directory
3. overriding set is empty (`{ }`)
4. not containing path expressions other than relative path (to
makenixpkgs-vet happy)
5. not referenced by nix files outside of the directory, other
than`pkgs/top-level/all-packages.nix`
6. not referencing nix files outside of the directory
7. not referencing `default.nix` (since it's changed to `package.nix`)
8. `outPath` doesn't change after migration

The tool is here: https://github.com/Aleksanaa/by-name-migrate.
2024-11-09 20:04:51 +08:00

42 lines
891 B
Nix

{ lib
, stdenv
, fetchurl
, zlib
}:
stdenv.mkDerivation rec {
pname = "subread";
version = "2.0.7";
src = fetchurl {
url = "mirror://sourceforge/subread/subread-${version}/subread-${version}-source.tar.gz";
sha256 = "sha256-/tjt3hn52NiqEo721K5atnvOLb8iWJ9AlJlaE6cVq3U=";
};
buildInputs = [
zlib
];
configurePhase = ''
cd src
cp Makefile.${if stdenv.hostPlatform.isLinux then "Linux" else "MacOS"} Makefile
'';
makeFlags = [ "CC_EXEC=cc" ];
installPhase = ''
mkdir $out
cp -r ../bin $out
'';
meta = with lib; {
broken = stdenv.hostPlatform.isDarwin;
description = "High-performance read alignment, quantification and mutation discovery";
license = licenses.gpl3;
maintainers = with maintainers; [ jbedo ];
platforms = [ "x86_64-darwin" "x86_64-linux" ];
homepage = "https://subread.sourceforge.net/";
};
}