mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-25 23:23:07 +00:00
128 lines
5.1 KiB
Nix
128 lines
5.1 KiB
Nix
{ lib, stdenv, fetchurl, bzip2, gfortran, libX11, libXmu, libXt, libjpeg, libpng
|
|
, libtiff, ncurses, pango, pcre2, perl, readline, tcl, texLive, tk, xz, zlib
|
|
, less, texinfo, graphviz, icu, pkg-config, bison, imake, which, jdk, blas, lapack
|
|
, curl, Cocoa, Foundation, libobjc, libcxx, tzdata
|
|
, withRecommendedPackages ? true
|
|
, enableStrictBarrier ? false
|
|
, enableMemoryProfiling ? false
|
|
# R as of writing does not support outputting both .so and .a files; it outputs:
|
|
# --enable-R-static-lib conflicts with --enable-R-shlib and will be ignored
|
|
, static ? false
|
|
}:
|
|
|
|
assert (!blas.isILP64) && (!lapack.isILP64);
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "R";
|
|
version = "4.1.2";
|
|
|
|
src = fetchurl {
|
|
url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz";
|
|
sha256 = "sha256-IDYiXp9yB9TOCX5Ulyrs2qi0DX2ZEc0mSR+sWg+rOK8=";
|
|
};
|
|
|
|
dontUseImakeConfigure = true;
|
|
|
|
buildInputs = [
|
|
bzip2 gfortran libX11 libXmu libXt libXt libjpeg libpng libtiff ncurses
|
|
pango pcre2 perl readline texLive xz zlib less texinfo graphviz icu
|
|
pkg-config bison imake which blas lapack curl tcl tk jdk
|
|
] ++ lib.optionals stdenv.isDarwin [ Cocoa Foundation libobjc libcxx ];
|
|
|
|
patches = [
|
|
./no-usr-local-search-paths.patch
|
|
];
|
|
|
|
# Test of the examples for package 'tcltk' fails in Darwin sandbox. See:
|
|
# https://github.com/NixOS/nixpkgs/issues/146131
|
|
postPatch = lib.optionalString stdenv.isDarwin ''
|
|
substituteInPlace configure \
|
|
--replace "-install_name libRblas.dylib" "-install_name $out/lib/R/lib/libRblas.dylib" \
|
|
--replace "-install_name libRlapack.dylib" "-install_name $out/lib/R/lib/libRlapack.dylib" \
|
|
--replace "-install_name libR.dylib" "-install_name $out/lib/R/lib/libR.dylib"
|
|
substituteInPlace tests/Examples/Makefile.in \
|
|
--replace "test-Examples: test-Examples-Base" "test-Examples:" # do not test the examples
|
|
'';
|
|
|
|
dontDisableStatic = static;
|
|
|
|
preConfigure = ''
|
|
configureFlagsArray=(
|
|
--disable-lto
|
|
--with${lib.optionalString (!withRecommendedPackages) "out"}-recommended-packages
|
|
--with-blas="-L${blas}/lib -lblas"
|
|
--with-lapack="-L${lapack}/lib -llapack"
|
|
--with-readline
|
|
--with-tcltk --with-tcl-config="${tcl}/lib/tclConfig.sh" --with-tk-config="${tk}/lib/tkConfig.sh"
|
|
--with-cairo
|
|
--with-libpng
|
|
--with-jpeglib
|
|
--with-libtiff
|
|
--with-ICU
|
|
${lib.optionalString enableStrictBarrier "--enable-strict-barrier"}
|
|
${lib.optionalString enableMemoryProfiling "--enable-memory-profiling"}
|
|
${if static then "--enable-R-static-lib" else "--enable-R-shlib"}
|
|
AR=$(type -p ar)
|
|
AWK=$(type -p gawk)
|
|
CC=$(type -p cc)
|
|
CXX=$(type -p c++)
|
|
FC="${gfortran}/bin/gfortran" F77="${gfortran}/bin/gfortran"
|
|
JAVA_HOME="${jdk}"
|
|
RANLIB=$(type -p ranlib)
|
|
R_SHELL="${stdenv.shell}"
|
|
'' + lib.optionalString stdenv.isDarwin ''
|
|
--disable-R-framework
|
|
--without-x
|
|
OBJC="clang"
|
|
CPPFLAGS="-isystem ${lib.getDev libcxx}/include/c++/v1"
|
|
LDFLAGS="-L${lib.getLib libcxx}/lib"
|
|
'' + ''
|
|
)
|
|
echo >>etc/Renviron.in "TCLLIBPATH=${tk}/lib"
|
|
echo >>etc/Renviron.in "TZDIR=${tzdata}/share/zoneinfo"
|
|
'';
|
|
|
|
installTargets = [ "install" "install-info" "install-pdf" ];
|
|
|
|
# The store path to "which" is baked into src/library/base/R/unix/system.unix.R,
|
|
# but Nix cannot detect it as a run-time dependency because the installed file
|
|
# is compiled and compressed, which hides the store path.
|
|
postFixup = "echo ${which} > $out/nix-support/undetected-runtime-dependencies";
|
|
|
|
doCheck = true;
|
|
preCheck = "export TZ=CET; bin/Rscript -e 'sessionInfo()'";
|
|
|
|
enableParallelBuilding = true;
|
|
|
|
setupHook = ./setup-hook.sh;
|
|
|
|
meta = with lib; {
|
|
homepage = "http://www.r-project.org/";
|
|
description = "Free software environment for statistical computing and graphics";
|
|
license = licenses.gpl2Plus;
|
|
|
|
longDescription = ''
|
|
GNU R is a language and environment for statistical computing and
|
|
graphics that provides a wide variety of statistical (linear and
|
|
nonlinear modelling, classical statistical tests, time-series
|
|
analysis, classification, clustering, ...) and graphical
|
|
techniques, and is highly extensible. One of R's strengths is the
|
|
ease with which well-designed publication-quality plots can be
|
|
produced, including mathematical symbols and formulae where
|
|
needed. R is an integrated suite of software facilities for data
|
|
manipulation, calculation and graphical display. It includes an
|
|
effective data handling and storage facility, a suite of operators
|
|
for calculations on arrays, in particular matrices, a large,
|
|
coherent, integrated collection of intermediate tools for data
|
|
analysis, graphical facilities for data analysis and display
|
|
either on-screen or on hardcopy, and a well-developed, simple and
|
|
effective programming language which includes conditionals, loops,
|
|
user-defined recursive functions and input and output facilities.
|
|
'';
|
|
|
|
platforms = platforms.all;
|
|
|
|
maintainers = with maintainers; [ jbedo ] ++ teams.sage.members;
|
|
};
|
|
}
|