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4a7f99d55d
Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
35 lines
1.0 KiB
Nix
35 lines
1.0 KiB
Nix
{ lib, stdenv, fetchFromGitHub, makeWrapper, zlib, perl, perlPackages }:
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stdenv.mkDerivation rec {
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version = "4.8.1";
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pname = "cd-hit";
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src = fetchFromGitHub {
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owner = "weizhongli";
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repo = "cdhit";
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rev = "V${version}";
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sha256 = "032nva6iiwmw59gjipm1mv0xlcckhxsf45mc2qbnv19lbis0q22i";
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};
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propagatedBuildInputs = [ perl perlPackages.TextNSP perlPackages.PerlMagick perlPackages.Storable ];
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nativeBuildInputs = [ zlib makeWrapper ];
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makeFlags = [ "PREFIX=$(out)/bin" ];
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preInstall = "mkdir -p $out/bin";
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postFixup = ''
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wrapProgram $out/bin/FET.pl --prefix PERL5LIB : $PERL5LIB
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wrapProgram $out/bin/plot_2d.pl --prefix PERL5LIB : $PERL5LIB
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wrapProgram $out/bin/clstr_list_sort.pl --prefix PERL5LIB : $PERL5LIB
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'';
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meta = with lib; {
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description = "Clustering and comparing protein or nucleotide sequences";
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homepage = "http://weizhongli-lab.org/cd-hit/";
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license = licenses.gpl2;
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maintainers = [ maintainers.bzizou ];
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platforms = platforms.unix;
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};
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}
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