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39fb426da5
This is needed for the SimpleITK Python package to import successfully rather than throw an error due to missing symbols.
88 lines
3.0 KiB
Nix
88 lines
3.0 KiB
Nix
{ version, rev, sourceSha256 }:
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{ lib, stdenv, fetchFromGitHub, cmake, makeWrapper
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, pkg-config, libX11, libuuid, xz, vtk, Cocoa }:
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let
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itkGenericLabelInterpolatorSrc = fetchFromGitHub {
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owner = "InsightSoftwareConsortium";
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repo = "ITKGenericLabelInterpolator";
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rev = "2f3768110ffe160c00c533a1450a49a16f4452d9";
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hash = "sha256-Cm3jg14MMnbr/sP+gqR2Rh25xJjoRvpmY/jP/DKH978=";
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};
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itkAdaptiveDenoisingSrc = fetchFromGitHub {
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owner = "ntustison";
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repo = "ITKAdaptiveDenoising";
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rev = "24825c8d246e941334f47968553f0ae388851f0c";
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hash = "sha256-deJbza36c0Ohf9oKpO2T4po37pkyI+2wCSeGL4r17Go=";
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};
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itkSimpleITKFiltersSrc = fetchFromGitHub {
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owner = "InsightSoftwareConsortium";
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repo = "ITKSimpleITKFilters";
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rev = "bb896868fc6480835495d0da4356d5db009592a6";
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hash = "sha256-MfaIA0xxA/pzUBSwnAevr17iR23Bo5iQO2cSyknS3o4=";
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};
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in
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stdenv.mkDerivation {
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pname = "itk";
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inherit version;
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src = fetchFromGitHub {
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owner = "InsightSoftwareConsortium";
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repo = "ITK";
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inherit rev;
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sha256 = sourceSha256;
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};
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postPatch = ''
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substituteInPlace CMake/ITKSetStandardCompilerFlags.cmake \
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--replace "-march=corei7" "" \
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--replace "-mtune=native" ""
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substituteInPlace Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmopenjpeg/src/lib/openjp2/libopenjp2.pc.cmake.in \
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--replace "@OPENJPEG_INSTALL_LIB_DIR@" "@OPENJPEG_INSTALL_FULL_LIB_DIR@"
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ln -sr ${itkGenericLabelInterpolatorSrc} Modules/External/ITKGenericLabelInterpolator
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ln -sr ${itkAdaptiveDenoisingSrc} Modules/External/ITKAdaptiveDenoising
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ln -sr ${itkSimpleITKFiltersSrc} Modules/External/ITKSimpleITKFilters
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'';
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cmakeFlags = [
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"-DBUILD_EXAMPLES=OFF"
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"-DBUILD_SHARED_LIBS=ON"
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"-DITK_FORBID_DOWNLOADS=ON"
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"-DModule_ITKMINC=ON"
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"-DModule_ITKIOMINC=ON"
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"-DModule_ITKIOTransformMINC=ON"
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"-DModule_SimpleITKFilters=ON"
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"-DModule_ITKVtkGlue=ON"
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"-DModule_ITKReview=ON"
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"-DModule_MGHIO=ON"
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"-DModule_AdaptiveDenoising=ON"
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"-DModule_GenericLabelInterpolator=ON"
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];
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nativeBuildInputs = [ cmake xz makeWrapper ];
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buildInputs = [ libX11 libuuid vtk ] ++ lib.optionals stdenv.isDarwin [ Cocoa ];
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# Due to ITKVtkGlue=ON and the additional dependencies needed to configure VTK 9
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# (specifically libGL and libX11 on Linux),
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# it's now seemingly necessary for packages that configure ITK to
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# also include configuration deps of VTK, even if VTK is not required or available.
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# These deps were propagated from VTK 9 in https://github.com/NixOS/nixpkgs/pull/206935,
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# so we simply propagate them again from ITK.
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# This admittedly is a hack and seems like an issue with VTK 9's CMake configuration.
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propagatedBuildInputs = vtk.propagatedBuildInputs;
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postInstall = ''
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wrapProgram "$out/bin/h5c++" --prefix PATH ":" "${pkg-config}/bin"
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'';
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meta = {
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description = "Insight Segmentation and Registration Toolkit";
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homepage = "https://www.itk.org";
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license = lib.licenses.asl20;
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maintainers = with lib.maintainers; [viric];
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};
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}
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