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angsd
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angsd: pull patch pending upstream inclusion for parallel build fix
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2023-08-20 08:50:53 +01:00 |
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ants
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ants: 2.5.0 -> 2.5.1
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2024-01-26 01:12:12 +01:00 |
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aragorn
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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astral
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astral: make deterministic and clean up
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2024-03-19 11:24:39 +01:00 |
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bamtools
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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bayescan
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bcftools
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bcftools: 1.19 -> 1.20
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2024-04-16 00:22:42 +00:00 |
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bedops
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bedtools
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bedtools: 2.31.0 -> 2.31.1
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2023-11-09 06:18:08 +00:00 |
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bftools
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bioawk
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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blast
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blast-bin: add sourceProvenance to meta
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2023-10-07 10:12:24 +09:00 |
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bowtie
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bowtie2
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bowtie2: 2.5.2 -> 2.5.3
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2024-01-18 01:41:31 +00:00 |
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bppsuite
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bwa
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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bwa-mem2
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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cd-hit
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clustal-omega
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cmtk
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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conglomerate
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conglomerate: change license to hpndUc
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2024-03-20 20:49:33 +01:00 |
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dcm2niix
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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deeptools
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deeptools: 3.5.4 -> 3.5.5
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2024-03-09 10:06:54 +00:00 |
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delly
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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diamond
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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dssp
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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ecopcr
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eggnog-mapper
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eggnog-mapper: 2.1.10 -> 2.1.12
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2024-01-18 19:17:47 +00:00 |
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emboss
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est-sfs
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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exonerate
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EZminc
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fastp
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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febio-studio
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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flywheel-cli
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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freebayes
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gatk
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gatk: 4.4.0.0 -> 4.5.0.0
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2023-12-15 04:20:42 +00:00 |
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genmap
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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hh-suite
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hh-suite: fix build on GCC 13
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2024-02-08 21:54:47 +00:00 |
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hisat2
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hmmer
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hmmer: add changelog to meta
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2023-09-24 04:24:00 +00:00 |
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igv
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igv: 2.17.2 -> 2.17.3
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2024-03-12 02:48:25 +00:00 |
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inormalize
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inormalize: fix build on darwin
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2024-01-21 23:26:55 +01:00 |
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iqtree
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iqtree: 2.3.1 -> 2.3.2
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2024-04-11 13:08:33 +00:00 |
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itsx
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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iv
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jbrowse
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treewide: unbreak appimageTools.wrapType2 builds
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2024-04-24 15:26:52 +02:00 |
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kalign
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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kallisto
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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kent
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perlPackages.BioBigFile: Addressing reviewer change
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2023-11-21 23:16:39 +01:00 |
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kssd
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kssd: enable aarch64-linux support & tests
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2023-11-03 19:34:28 +09:00 |
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last
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last: 1541 -> 1542
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2024-02-19 07:08:37 +00:00 |
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macs2
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python312Packages.cython: 0.29.36 -> 3.0.9
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2024-03-27 18:35:05 +01:00 |
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macse
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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mafft
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mafft: 7.520 -> 7.525
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2024-03-13 12:21:27 +00:00 |
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manta
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megahit
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megahit: fir gcc-13 build failure
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2024-02-10 10:26:43 +00:00 |
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meme-suite
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messer-slim
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messer-slim: 4.2 -> 4.2.1
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2024-04-13 01:13:01 +00:00 |
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migrate
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minc-tools
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minc-widgets
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minia
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treewide: remove licenses.agpl3
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2024-03-21 18:09:24 +02:00 |
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minimap2
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minimap2: 2.27 -> 2.28
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2024-04-04 23:45:37 +00:00 |
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mmseqs2
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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mni_autoreg
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mrbayes
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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mrtrix
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mrtrix: unstable-2021-11-25 -> 3.0.4
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2023-09-06 12:11:38 -04:00 |
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muscle
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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N3
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n3: fix build on darwin
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2024-01-21 23:22:54 +01:00 |
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nest
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nest: fix hash
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2024-04-20 10:17:24 +02:00 |
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neuron
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neuron-mpi: 8.2.2 -> 8.2.3
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2023-09-23 02:33:53 +00:00 |
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niftyreg
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niftyseg
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obitools
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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octopus
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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paml
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paml: refactor
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2023-07-14 15:08:14 +09:00 |
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picard-tools
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picard-tools: 3.1.0 -> 3.1.1
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2023-11-15 14:35:32 +00:00 |
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platypus
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plink-ng
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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poretools
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poretools: mark as broken
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2023-12-11 04:28:39 +00:00 |
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prodigal
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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quast
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treewide: change pythonForBuild to pythonOnBuildForHost
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2023-11-05 17:42:12 -08:00 |
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raxml
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raxml: 8.2.12 -> 8.2.13
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2023-10-16 22:16:12 +00:00 |
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repseek
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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sambamba
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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samblaster
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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samtools
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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seaview
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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seqkit
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seqkit: 2.8.0 -> 2.8.1
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2024-04-07 14:35:21 +00:00 |
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seqtk
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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snpeff
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somatic-sniper
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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sortmerna
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treewide: switch from rocksdb -> rocksdb_8_3
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2024-04-22 13:02:14 +02:00 |
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spades
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SPAdes: fix build
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2024-01-20 15:28:48 -03:00 |
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sratoolkit
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treewide: remove unneeded dots and slashes in sourceRoots
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2023-08-12 08:29:56 +00:00 |
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stacks
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stacks: 2.65 -> 2.66
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2024-01-24 07:54:36 +00:00 |
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star
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treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases
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2023-08-03 16:32:03 +00:00 |
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strelka
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strelka: add aarch64-linux support
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2023-12-11 13:37:17 +01:00 |
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subread
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sumatools
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svaba
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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tandem-aligner
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treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases
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2023-08-03 16:32:03 +00:00 |
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tebreak
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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treemix
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trf
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trimal
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treewide: remove execute bit for non-executable *.nix files
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2023-10-20 19:55:39 +02:00 |
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trimmomatic
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treewide: use stripJavaArchivesHook instead of canonicalize-jars-hook
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2024-03-17 13:35:12 +01:00 |
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truvari
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truvari: 4.0.0 -> 4.1.0
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2023-10-07 01:30:27 +09:00 |
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varscan
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vcftools
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treewide: remove execute bit for non-executable *.nix files
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2023-10-20 19:55:39 +02:00 |
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veryfasttree
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treewide: add meta.mainProgram to packages with a single binary
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2024-03-19 03:14:51 +01:00 |
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whisper
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whisper: enable parallel building
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2024-01-25 19:27:12 +00:00 |
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xenomapper
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