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571c71e6f7
We are migrating packages that meet below requirements:
1. using `callPackage`
2. called path is a directory
3. overriding set is empty (`{ }`)
4. not containing path expressions other than relative path (to
makenixpkgs-vet happy)
5. not referenced by nix files outside of the directory, other
than`pkgs/top-level/all-packages.nix`
6. not referencing nix files outside of the directory
7. not referencing `default.nix` (since it's changed to `package.nix`)
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The tool is here: https://github.com/Aleksanaa/by-name-migrate.
36 lines
1.0 KiB
Nix
36 lines
1.0 KiB
Nix
{ lib, stdenv, fetchurl, hmmer, perl }:
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stdenv.mkDerivation rec {
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version = "1.1.1";
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pname = "itsx";
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src = fetchurl {
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url = "http://microbiology.se/sw/ITSx_${version}.tar.gz";
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sha256 = "0lrmy2n3ax7f208k0k8l3yz0j5cpz05hv4hx1nnxzn0c51z1pc31";
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};
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buildInputs = [ hmmer perl ];
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buildPhase = ''
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sed -e "s,profileDB = .*,profileDB = \"$out/share/ITSx_db/HMMs\";," -i ITSx
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sed "3 a \$ENV{\'PATH\'}='${hmmer}/bin:'.\"\$ENV{\'PATH\'}\";" -i ITSx
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mkdir bin
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mv ITSx bin
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'';
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installPhase = ''
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mkdir -p $out/share/doc && cp -a bin $out/
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cp *pdf $out/share/doc
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cp -r ITSx_db $out/share
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'';
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meta = with lib; {
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description = "Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for use in environmental sequencing";
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mainProgram = "ITSx";
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homepage = "https://microbiology.se/software/itsx/";
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license = licenses.gpl3;
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maintainers = [ maintainers.bzizou ];
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platforms = platforms.unix;
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};
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}
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