mirror of
https://github.com/NixOS/nixpkgs.git
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103 lines
4.1 KiB
Nix
103 lines
4.1 KiB
Nix
{ stdenv
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, fetchFromGitHub
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, fetchpatch
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}:
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# This file is responsible for fetching the sage source and adding necessary patches.
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# It does not actually build anything, it just copies the patched sources to $out.
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# This is done because multiple derivations rely on these sources and they should
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# all get the same sources with the same patches applied.
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stdenv.mkDerivation rec {
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version = "10.0";
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pname = "sage-src";
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src = fetchFromGitHub {
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owner = "sagemath";
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repo = "sage";
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rev = version;
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sha256 = "sha256-zN/Lo/GBCjYGemuaYpgG3laufN8te3wPjXMQ+Me9zgY=";
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};
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# Patches needed because of particularities of nix or the way this is packaged.
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# The goal is to upstream all of them and get rid of this list.
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nixPatches = [
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# Parallelize docubuild using subprocesses, fixing an isolation issue. See
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# https://groups.google.com/forum/#!topic/sage-packaging/YGOm8tkADrE
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./patches/sphinx-docbuild-subprocesses.patch
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# After updating smypow to (https://github.com/sagemath/sage/issues/3360)
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# we can now set the cache dir to be within the .sage directory. This is
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# not strictly necessary, but keeps us from littering in the user's HOME.
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./patches/sympow-cache.patch
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];
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# Since sage unfortunately does not release bugfix releases, packagers must
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# fix those bugs themselves. This is for critical bugfixes, where "critical"
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# == "causes (transient) doctest failures / somebody complained".
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bugfixPatches = [
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# Sage uses mixed integer programs (MIPs) to find edge disjoint
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# spanning trees. For some reason, aarch64 glpk takes much longer
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# than x86_64 glpk to solve such MIPs. Since the MIP formulation
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# has "numerous problems" and will be replaced by a polynomial
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# algorithm soon, disable this test for now.
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# https://github.com/sagemath/sage/issues/34575
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./patches/disable-slow-glpk-test.patch
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];
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# Patches needed because of package updates. We could just pin the versions of
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# dependencies, but that would lead to rebuilds, confusion and the burdons of
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# maintaining multiple versions of dependencies. Instead we try to make sage
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# compatible with never dependency versions when possible. All these changes
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# should come from or be proposed to upstream. This list will probably never
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# be empty since dependencies update all the time.
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packageUpgradePatches = [
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# https://github.com/sagemath/sage/pull/35584, positively reviewed
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(fetchpatch {
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name = "networkx-3.1-upgrade.patch";
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url = "https://github.com/sagemath/sage/compare/10.0.rc2..e599562cf5fdfb9799a5412fac40c2f8e9f97341.diff";
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sha256 = "sha256-3A90kXqNR0c7+k8xrZXAt5wqWg/VFAPNhQujwTdOyhI=";
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})
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# https://github.com/sagemath/sage/pull/35612, positively reviewed
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(fetchpatch {
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name = "linbox-1.7-upgrade.patch";
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url = "https://github.com/sagemath/sage/compare/10.0.rc2..9c8796c7b677e3a056348e3510331ea8b8c3c42e.diff";
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sha256 = "sha256-/TpvIQZUqmbUuz6wvp3ni9oRir5LBA2FKDJcmnHI1r4=";
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})
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# https://github.com/sagemath/sage/pull/35619
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(fetchpatch {
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name = "maxima-5.46.0-upgrade.patch";
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url = "https://github.com/sagemath/sage/compare/10.0.rc3..7e86af5dae8f89868b25a6f57189bb5ca618da89.diff";
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sha256 = "sha256-pxSxdJ2lyHoMUIxhlIn1nTHaddRxGvvTj9IbwFCTBFU=";
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})
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# https://github.com/sagemath/sage/pull/35635, positively reviewed
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(fetchpatch {
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name = "sympy-1.12-upgrade.patch";
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url = "https://github.com/sagemath/sage/compare/10.0.rc2..aa4193cdc8ec9fb7bd7c49696b7f914668f7913a.diff";
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sha256 = "sha256-UAmYCxHvnE5p+H2DySNZTPFVm915jHtOEoG+tZz5n7I=";
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})
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];
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patches = nixPatches ++ bugfixPatches ++ packageUpgradePatches;
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# do not create .orig backup files if patch applies with fuzz
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patchFlags = [ "--no-backup-if-mismatch" "-p1" ];
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postPatch = ''
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# Make sure sage can at least be imported without setting any environment
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# variables. It won't be close to feature complete though.
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sed -i \
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"s|var(\"SAGE_ROOT\".*|var(\"SAGE_ROOT\", \"$out\")|" \
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src/sage/env.py
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'';
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buildPhase = "# do nothing";
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installPhase = ''
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cp -r . "$out"
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'';
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}
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