| .. |
|
angsd
|
pkgs/applications: replace "${version}" with version
|
2023-07-02 14:39:50 -04:00 |
|
ants
|
ants: 2.4.3 -> 2.4.4
|
2023-05-02 12:29:21 -04:00 |
|
aragorn
|
aragorn: fix format
|
2023-06-08 18:42:29 +09:00 |
|
astral
|
|
|
|
bayescan
|
|
|
|
bcftools
|
bcftools: 1.16 -> 1.17
|
2023-02-25 23:02:27 +00:00 |
|
bedops
|
bedops: fix build on darwin
|
2023-04-24 22:11:47 +09:00 |
|
bedtools
|
bedtools: 2.30.0 -> 2.31.0
|
2023-04-29 03:05:55 +00:00 |
|
bftools
|
|
|
|
blast
|
blast: 2.13.0 -> 2.14.0
|
2023-05-26 00:23:49 +00:00 |
|
bowtie
|
|
|
|
bowtie2
|
|
|
|
bppsuite
|
bppsuite: fix homepage
|
2023-06-15 12:18:11 -04:00 |
|
bwa
|
bwa: add runHook
|
2023-05-15 16:13:49 +09:00 |
|
cd-hit
|
|
|
|
clustal-omega
|
|
|
|
cmtk
|
|
|
|
conglomerate
|
|
|
|
dcm2niix
|
|
|
|
deeptools
|
|
|
|
delly
|
|
|
|
diamond
|
diamond: 2.1.7 -> 2.1.8
|
2023-06-25 04:35:30 +00:00 |
|
dssp
|
dssp: fix format
|
2023-07-01 16:40:29 +09:00 |
|
ecopcr
|
|
|
|
eggnog-mapper
|
|
|
|
emboss
|
|
|
|
est-sfs
|
|
|
|
exonerate
|
|
|
|
EZminc
|
|
|
|
fastp
|
fastp: 0.23.3 -> 0.23.4
|
2023-06-04 03:21:21 +00:00 |
|
febio-studio
|
treewide: make ffmpeg_4-dependant packages depend on ffmpeg_4
|
2023-03-13 16:42:22 -06:00 |
|
flywheel-cli
|
|
|
|
freebayes
|
|
|
|
gatk
|
gatk: 4.3.0.0 -> 4.4.0.0
|
2023-03-18 01:10:14 +00:00 |
|
genmap
|
|
|
|
hh-suite
|
hh-suite: init at 3.3.0
|
2023-04-19 10:32:35 +09:00 |
|
hisat2
|
|
|
|
hmmer
|
|
|
|
igv
|
igv: 2.16.0 -> 2.16.1
|
2023-05-31 13:33:15 +00:00 |
|
inormalize
|
|
|
|
iqtree
|
iqtree: 2.2.2.4 -> 2.2.2.6
|
2023-05-30 01:13:17 +00:00 |
|
itsx
|
|
|
|
iv
|
|
|
|
jbrowse
|
jbrowse: init at 2.5.0
|
2023-05-12 11:24:26 -07:00 |
|
kalign
|
kalign: init at 3.3.5
|
2023-06-14 21:05:58 +09:00 |
|
kallisto
|
|
|
|
kent
|
kent: package headers too.
|
2023-05-06 19:48:14 +02:00 |
|
kssd
|
|
|
|
last
|
last: 1453 -> 1456
|
2023-06-25 11:01:07 -03:00 |
|
macs2
|
macs2: rename from MACS2
|
2023-06-13 21:47:47 +00:00 |
|
macse
|
|
|
|
mafft
|
mafft: 7.515 -> 7.520
|
2023-04-12 13:28:24 +09:00 |
|
manta
|
|
|
|
megahit
|
|
|
|
meme-suite
|
|
|
|
messer-slim
|
|
|
|
migrate
|
|
|
|
minc-tools
|
|
|
|
minc-widgets
|
|
|
|
minia
|
|
|
|
minimap2
|
minimap2: 2.25 -> 2.26
|
2023-05-03 19:38:48 +00:00 |
|
mmseqs2
|
|
|
|
mni_autoreg
|
|
|
|
mosdepth
|
mosdepth: 0.3.3 -> 0.3.4
|
2023-06-28 10:52:42 +00:00 |
|
mrbayes
|
|
|
|
mrtrix
|
|
|
|
muscle
|
pkgs/applications: replace "${version}" with version
|
2023-07-02 14:39:50 -04:00 |
|
N3
|
|
|
|
nest
|
nest: specify license
|
2023-03-18 11:23:52 +01:00 |
|
neuron
|
treewide: fix lints
|
2023-03-11 00:55:17 +02:00 |
|
niftyreg
|
|
|
|
niftyseg
|
|
|
|
obitools
|
|
|
|
octopus
|
|
|
|
paml
|
|
|
|
picard-tools
|
picard-tools: 2.27.5 -> 3.0.0
|
2023-03-01 14:43:38 +00:00 |
|
platypus
|
|
|
|
plink-ng
|
|
|
|
poretools
|
|
|
|
prodigal
|
|
|
|
quast
|
treewide: python{ => .pythonForBuild}.interpreter
|
2023-02-26 20:26:17 +00:00 |
|
raxml
|
|
|
|
repseek
|
|
|
|
sambamba
|
|
|
|
samblaster
|
|
|
|
samtools
|
Samtools: 1.13 -> 1.17
|
2023-04-12 12:00:25 +02:00 |
|
seaview
|
|
|
|
seqkit
|
seqkit: 2.3.1 -> 2.4.0
|
2023-03-21 10:45:22 +00:00 |
|
seqtk
|
seqtk: 1.3 -> 1.4
|
2023-05-28 06:48:51 +00:00 |
|
snpeff
|
|
|
|
somatic-sniper
|
|
|
|
sortmerna
|
|
|
|
spades
|
|
|
|
sratoolkit
|
|
|
|
stacks
|
|
|
|
star
|
|
|
|
strelka
|
|
|
|
subread
|
subread: 2.0.5 -> 2.0.6
|
2023-05-10 22:30:35 +10:00 |
|
sumatools
|
|
|
|
svaba
|
|
|
|
tandem-aligner
|
tandem-aligner: add changelog to meta
|
2023-04-19 21:23:21 +09:00 |
|
tebreak
|
|
|
|
treemix
|
|
|
|
trf
|
trf: init at 4.09.1
|
2023-03-19 22:25:42 +09:00 |
|
trimal
|
|
|
|
truvari
|
truvari: add patches to fix truvari anno
|
2023-05-15 10:01:38 +09:00 |
|
varscan
|
varscan: 2.4.5 -> 2.4.6
|
2023-04-05 14:55:31 +00:00 |
|
vcftools
|
|
|
|
veryfasttree
|
|
|
|
whisper
|
|
|
|
xenomapper
|
|
|
