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4a7f99d55d
Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
35 lines
1000 B
Nix
35 lines
1000 B
Nix
{ lib, stdenv, fetchurl, hmmer, perl }:
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stdenv.mkDerivation rec {
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version = "1.1.1";
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pname = "itsx";
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src = fetchurl {
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url = "http://microbiology.se/sw/ITSx_${version}.tar.gz";
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sha256 = "0lrmy2n3ax7f208k0k8l3yz0j5cpz05hv4hx1nnxzn0c51z1pc31";
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};
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buildInputs = [ hmmer perl ];
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buildPhase = ''
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sed -e "s,profileDB = .*,profileDB = \"$out/share/ITSx_db/HMMs\";," -i ITSx
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sed "3 a \$ENV{\'PATH\'}='${hmmer}/bin:'.\"\$ENV{\'PATH\'}\";" -i ITSx
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mkdir bin
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mv ITSx bin
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'';
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installPhase = ''
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mkdir -p $out/share/doc && cp -a bin $out/
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cp *pdf $out/share/doc
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cp -r ITSx_db $out/share
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'';
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meta = with lib; {
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description = "Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for use in environmental sequencing";
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homepage = "https://microbiology.se/software/itsx/";
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license = licenses.gpl3;
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maintainers = [ maintainers.bzizou ];
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platforms = platforms.unix;
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};
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}
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