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571c71e6f7
We are migrating packages that meet below requirements:
1. using `callPackage`
2. called path is a directory
3. overriding set is empty (`{ }`)
4. not containing path expressions other than relative path (to
makenixpkgs-vet happy)
5. not referenced by nix files outside of the directory, other
than`pkgs/top-level/all-packages.nix`
6. not referencing nix files outside of the directory
7. not referencing `default.nix` (since it's changed to `package.nix`)
8. `outPath` doesn't change after migration
The tool is here: https://github.com/Aleksanaa/by-name-migrate.
41 lines
1.0 KiB
Nix
41 lines
1.0 KiB
Nix
{ lib, stdenv
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, fetchFromGitHub
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, useMpi ? false
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, mpi
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}:
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stdenv.mkDerivation rec {
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pname = "RAxML${lib.optionalString useMpi "-mpi"}";
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version = "8.2.13";
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src = fetchFromGitHub {
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owner = "stamatak";
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repo = "standard-RAxML";
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rev = "v${version}";
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sha256 = "sha256-w+Eqi0GhVira1H6ZnMNeZGBMzDjiGT7JSFpQEVXONyk=";
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};
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buildInputs = lib.optionals useMpi [ mpi ];
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# TODO darwin, AVX and AVX2 makefile targets
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buildPhase = if useMpi then ''
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make -f Makefile.MPI.gcc
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'' else ''
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make -f Makefile.SSE3.PTHREADS.gcc
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'';
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installPhase = if useMpi then ''
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mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin
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'' else ''
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mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin
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'';
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meta = with lib; {
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description = "Tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies";
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license = licenses.gpl3;
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homepage = "https://sco.h-its.org/exelixis/web/software/raxml/";
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maintainers = [ maintainers.unode ];
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platforms = [ "i686-linux" "x86_64-linux" ];
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};
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}
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