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https://github.com/NixOS/nixpkgs.git
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47 lines
1.2 KiB
Nix
47 lines
1.2 KiB
Nix
{ stdenv, fetchFromGitHub, cmake, zlib, netcdf, nifticlib, hdf5 }:
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stdenv.mkDerivation rec {
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pname = "libminc";
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name = "${pname}-2018-01-17";
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owner = "BIC-MNI";
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# current master is significantly ahead of most recent release, so use Git version:
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src = fetchFromGitHub {
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inherit owner;
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repo = pname;
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rev = "a9cbe1353eae9791b7d5b03af16e0f86922ce40b";
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sha256 = "0mn4n3ihzcr1jw2g1vy6c8p4lkc88jwljk04argmj7k4djrgpxpa";
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};
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postPatch = ''
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patchShebangs .
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'';
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nativeBuildInputs = [ cmake ];
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buildInputs = [ zlib netcdf nifticlib hdf5 ];
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cmakeFlags = [
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"-DLIBMINC_MINC1_SUPPORT=ON"
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"-DLIBMINC_BUILD_SHARED_LIBS=ON"
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"-DLIBMINC_USE_SYSTEM_NIFTI=ON"
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];
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doCheck = true;
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checkPhase = ''
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export LD_LIBRARY_PATH="$(pwd)" # see #22060
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ctest -E 'ezminc_rw_test|minc_conversion' --output-on-failure
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# ezminc_rw_test can't find libminc_io.so.5.2.0; minc_conversion hits netcdf compilation issue
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'';
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enableParallelBuilding = true;
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meta = with stdenv.lib; {
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homepage = "https://github.com/${owner}/${pname}";
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description = "Medical imaging library based on HDF5";
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maintainers = with maintainers; [ bcdarwin ];
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platforms = platforms.unix;
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license = licenses.free;
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};
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}
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