mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-30 09:33:41 +00:00
4a7f99d55d
Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
36 lines
1.1 KiB
Nix
36 lines
1.1 KiB
Nix
{ lib, stdenv, fetchFromGitHub, cmake, zlib, python2 }:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "manta";
|
|
version = "1.6.0";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "Illumina";
|
|
repo = "manta";
|
|
rev = "v${version}";
|
|
sha256 = "1711xkcw8rpw9xv3bbm7v1aryjz4r341rkq5255192dg38sgq7w2";
|
|
};
|
|
|
|
nativeBuildInputs = [ cmake ];
|
|
buildInputs = [ zlib python2 ];
|
|
postFixup = ''
|
|
sed -i 's|/usr/bin/env python2|${python2.interpreter}|' $out/lib/python/makeRunScript.py
|
|
sed -i 's|/usr/bin/env python|${python2.interpreter}|' $out/lib/python/pyflow/pyflow.py
|
|
sed -i 's|/bin/bash|${stdenv.shell}|' $out/lib/python/pyflow/pyflowTaskWrapper.py
|
|
'';
|
|
doInstallCheck = true;
|
|
installCheckPhase = ''
|
|
rm $out/lib/python/**/*.pyc
|
|
PYTHONPATH=$out/lib/python:$PYTHONPATH python -c 'import makeRunScript'
|
|
PYTHONPATH=$out/lib/python/pyflow:$PYTHONPATH python -c 'import pyflowTaskWrapper; import pyflow'
|
|
'';
|
|
|
|
meta = with lib; {
|
|
description = "Structural variant caller";
|
|
license = licenses.gpl3;
|
|
homepage = "https://github.com/Illumina/manta";
|
|
maintainers = with maintainers; [ jbedo ];
|
|
platforms = platforms.x86_64;
|
|
};
|
|
}
|