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571c71e6f7
We are migrating packages that meet below requirements:
1. using `callPackage`
2. called path is a directory
3. overriding set is empty (`{ }`)
4. not containing path expressions other than relative path (to
makenixpkgs-vet happy)
5. not referenced by nix files outside of the directory, other
than`pkgs/top-level/all-packages.nix`
6. not referencing nix files outside of the directory
7. not referencing `default.nix` (since it's changed to `package.nix`)
8. `outPath` doesn't change after migration
The tool is here: https://github.com/Aleksanaa/by-name-migrate.
42 lines
1.2 KiB
Nix
42 lines
1.2 KiB
Nix
{ lib, stdenv, fetchzip, jdk17, testers, wrapGAppsHook3, igv }:
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stdenv.mkDerivation rec {
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pname = "igv";
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version = "2.17.4";
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src = fetchzip {
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url = "https://data.broadinstitute.org/igv/projects/downloads/${lib.versions.majorMinor version}/IGV_${version}.zip";
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sha256 = "sha256-LF/rwm/XlLHAJjiAlQVTmx5l+5Np2b5rPjoCdN/qERU=";
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};
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installPhase = ''
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mkdir -pv $out/{share,bin}
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cp -Rv * $out/share/
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sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh
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sed -i 's#\bjava\b#${jdk17}/bin/java#g' $out/share/igv.sh
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sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools
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sed -i 's#\bjava\b#${jdk17}/bin/java#g' $out/share/igvtools
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ln -s $out/share/igv.sh $out/bin/igv
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ln -s $out/share/igvtools $out/bin/igvtools
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chmod +x $out/bin/igv
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chmod +x $out/bin/igvtools
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'';
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nativeBuildInputs = [ wrapGAppsHook3 ];
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passthru.tests.version = testers.testVersion {
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package = igv;
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};
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meta = with lib; {
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homepage = "https://www.broadinstitute.org/igv/";
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description = "Visualization tool for interactive exploration of genomic datasets";
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license = licenses.mit;
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platforms = platforms.unix;
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maintainers = [ maintainers.mimame ];
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};
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}
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