mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-12 08:43:06 +00:00
571c71e6f7
We are migrating packages that meet below requirements:
1. using `callPackage`
2. called path is a directory
3. overriding set is empty (`{ }`)
4. not containing path expressions other than relative path (to
makenixpkgs-vet happy)
5. not referenced by nix files outside of the directory, other
than`pkgs/top-level/all-packages.nix`
6. not referencing nix files outside of the directory
7. not referencing `default.nix` (since it's changed to `package.nix`)
8. `outPath` doesn't change after migration
The tool is here: https://github.com/Aleksanaa/by-name-migrate.
35 lines
829 B
Nix
35 lines
829 B
Nix
{ lib, stdenv, fetchFromGitHub, cmake, hdf5, boost }:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "minia";
|
|
version = "3.2.1";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "GATB";
|
|
repo = "minia";
|
|
rev = "v${version}";
|
|
sha256 = "0bmfrywixaaql898l0ixsfkhxjf2hb08ssnqzlzacfizxdp46siq";
|
|
fetchSubmodules = true;
|
|
};
|
|
|
|
patches = [ ./no-bundle.patch ];
|
|
|
|
env.NIX_CFLAGS_COMPILE = toString [ "-Wformat" ];
|
|
|
|
nativeBuildInputs = [ cmake ];
|
|
buildInputs = [ hdf5 boost ];
|
|
|
|
prePatch = ''
|
|
rm -rf thirdparty/gatb-core/gatb-core/thirdparty/{hdf5,boost}
|
|
'';
|
|
|
|
meta = with lib; {
|
|
description = "Short read genome assembler";
|
|
mainProgram = "minia";
|
|
homepage = "https://github.com/GATB/minia";
|
|
license = licenses.agpl3Plus;
|
|
maintainers = with maintainers; [ jbedo ];
|
|
platforms = [ "x86_64-linux" ];
|
|
};
|
|
}
|