mirror of
https://github.com/NixOS/nixpkgs.git
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128 lines
3.9 KiB
Nix
128 lines
3.9 KiB
Nix
{ lib
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, stdenv
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, fetchurl
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, cmake
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, removeReferencesTo
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, cppSupport ? true
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, fortranSupport ? false
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, fortran
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, zlibSupport ? true
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, zlib
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, szipSupport ? false
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, szip
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, mpiSupport ? false
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, mpi
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, enableShared ? !stdenv.hostPlatform.isStatic
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, enableStatic ? stdenv.hostPlatform.isStatic
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, javaSupport ? false
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, jdk
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, usev110Api ? false
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, threadsafe ? false
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, python3
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}:
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# cpp and mpi options are mutually exclusive
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# (--enable-unsupported could be used to force the build)
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assert !cppSupport || !mpiSupport;
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let inherit (lib) optional optionals; in
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stdenv.mkDerivation rec {
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version = "1.14.3";
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pname = "hdf5"
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+ lib.optionalString cppSupport "-cpp"
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+ lib.optionalString fortranSupport "-fortran"
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+ lib.optionalString mpiSupport "-mpi"
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+ lib.optionalString threadsafe "-threadsafe";
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src = fetchurl {
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url =
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let
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majorMinor = lib.versions.majorMinor version;
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majorMinorPatch = with lib.versions; "${major version}.${minor version}.${patch version}";
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in
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"https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${majorMinor}/hdf5-${majorMinorPatch}/src/hdf5-${version}.tar.bz2";
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sha256 = "sha256-lCXyJO110SgLtG1vJpI92Tj5BA5+rr9X5m7HNXwI+Rc=";
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};
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passthru = {
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inherit
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cppSupport
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fortranSupport
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fortran
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zlibSupport
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zlib
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szipSupport
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szip
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mpiSupport
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mpi
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;
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};
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outputs = [ "out" "dev" "bin" ];
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nativeBuildInputs = [ removeReferencesTo cmake ]
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++ optional fortranSupport fortran;
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buildInputs = optional fortranSupport fortran
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++ optional szipSupport szip
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++ optional javaSupport jdk;
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propagatedBuildInputs = optional zlibSupport zlib
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++ optional mpiSupport mpi;
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cmakeFlags = [
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"-DHDF5_INSTALL_CMAKE_DIR=${placeholder "dev"}/lib/cmake"
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"-DBUILD_STATIC_LIBS=${lib.boolToString enableStatic}"
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] ++ lib.optional stdenv.isDarwin "-DHDF5_BUILD_WITH_INSTALL_NAME=ON"
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++ lib.optional cppSupport "-DHDF5_BUILD_CPP_LIB=ON"
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++ lib.optional fortranSupport "-DHDF5_BUILD_FORTRAN=ON"
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++ lib.optional szipSupport "-DHDF5_ENABLE_SZIP_SUPPORT=ON"
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++ lib.optionals mpiSupport [ "-DHDF5_ENABLE_PARALLEL=ON" ]
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++ lib.optional enableShared "-DBUILD_SHARED_LIBS=ON"
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++ lib.optional javaSupport "-DHDF5_BUILD_JAVA=ON"
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++ lib.optional usev110Api "-DDEFAULT_API_VERSION=v110"
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++ lib.optionals threadsafe [ "-DDHDF5_ENABLE_THREADSAFE:BOOL=ON" "-DHDF5_BUILD_HL_LIB=OFF" ]
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;
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postInstall = ''
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find "$out" -type f -exec remove-references-to -t ${stdenv.cc} '{}' +
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moveToOutput 'bin/' "''${!outputBin}"
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moveToOutput 'bin/h5cc' "''${!outputDev}"
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moveToOutput 'bin/h5c++' "''${!outputDev}"
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moveToOutput 'bin/h5fc' "''${!outputDev}"
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moveToOutput 'bin/h5pcc' "''${!outputDev}"
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moveToOutput 'bin/h5hlcc' "''${!outputDev}"
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moveToOutput 'bin/h5hlc++' "''${!outputDev}"
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'' + lib.optionalString enableShared
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# The shared build creates binaries with -shared suffixes,
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# so we remove these suffixes.
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''
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pushd ''${!outputBin}/bin
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for file in *-shared; do
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mv "$file" "''${file%%-shared}"
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done
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popd
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'';
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enableParallelBuilding = true;
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passthru.tests = {
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inherit (python3.pkgs) h5py;
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};
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meta = with lib; {
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description = "Data model, library, and file format for storing and managing data";
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longDescription = ''
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HDF5 supports an unlimited variety of datatypes, and is designed for flexible and efficient
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I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing
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applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and
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applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
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'';
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license = licenses.bsd3; # Lawrence Berkeley National Labs BSD 3-Clause variant
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maintainers = [ maintainers.markuskowa ];
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homepage = "https://www.hdfgroup.org/HDF5/";
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platforms = platforms.unix;
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};
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}
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