mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-21 13:13:33 +00:00
53 lines
1.6 KiB
Nix
53 lines
1.6 KiB
Nix
{ stdenv, fetchPypi, isPy27, python, buildPythonPackage
|
|
, numpy, hdf5, cython, six, pkgconfig, unittest2, fetchpatch
|
|
, mpi4py ? null, openssh }:
|
|
|
|
assert hdf5.mpiSupport -> mpi4py != null && hdf5.mpi == mpi4py.mpi;
|
|
|
|
with stdenv.lib;
|
|
|
|
let
|
|
mpi = hdf5.mpi;
|
|
mpiSupport = hdf5.mpiSupport;
|
|
in buildPythonPackage rec {
|
|
version = "2.9.0";
|
|
pname = "h5py";
|
|
|
|
src = fetchPypi {
|
|
inherit pname version;
|
|
sha256 = "9d41ca62daf36d6b6515ab8765e4c8c4388ee18e2a665701fef2b41563821002";
|
|
};
|
|
|
|
patches = [ ( fetchpatch {
|
|
# Skip a test that probes an already fixed bug in HDF5 (upstream patch)
|
|
url = "https://github.com/h5py/h5py/commit/141eafa531c6c09a06efe6a694251a1eea84908d.patch";
|
|
sha256 = "0lmdn0gznr7gadx7qkxybl945fvwk6r0cc4lg3ylpf8ril1975h8";
|
|
})];
|
|
|
|
configure_flags = "--hdf5=${hdf5}" + optionalString mpiSupport " --mpi";
|
|
|
|
postConfigure = ''
|
|
${python.executable} setup.py configure ${configure_flags}
|
|
|
|
# Needed to run the tests reliably. See:
|
|
# https://bitbucket.org/mpi4py/mpi4py/issues/87/multiple-test-errors-with-openmpi-30
|
|
${optionalString mpiSupport "export OMPI_MCA_rmaps_base_oversubscribe=yes"}
|
|
'';
|
|
|
|
preBuild = if mpiSupport then "export CC=${mpi}/bin/mpicc" else "";
|
|
|
|
checkInputs = optional isPy27 unittest2 ++ [ openssh ];
|
|
nativeBuildInputs = [ pkgconfig ];
|
|
buildInputs = [ hdf5 cython ]
|
|
++ optional mpiSupport mpi;
|
|
propagatedBuildInputs = [ numpy six]
|
|
++ optionals mpiSupport [ mpi4py openssh ];
|
|
|
|
meta = {
|
|
description =
|
|
"Pythonic interface to the HDF5 binary data format";
|
|
homepage = "http://www.h5py.org/";
|
|
license = stdenv.lib.licenses.bsd2;
|
|
};
|
|
}
|