nixpkgs/pkgs/applications/science/biology/blast/bin.nix
Artturin eac28f38d6 treewide: fix lints
Arg to lib.optional is a list

build time tool in buildInputs

*Flags not a list

https://github.com/nix-community/nixpkgs-lint
2023-04-18 20:20:56 +03:00

61 lines
1.6 KiB
Nix

{ lib
, stdenv
, fetchurl
, python3
, perl
, blast
, autoPatchelfHook
, zlib
, bzip2
, glib
, libxml2
, coreutils
}:
let
pname = "blast-bin";
version = "2.13.0";
srcs = rec {
x86_64-linux = fetchurl {
url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-linux.tar.gz";
hash = "sha256-QPK3OdT++GoNI1NHyEpu2/hB2hqHYPQ/vNXFAVCwVEc=";
};
aarch64-linux = fetchurl {
url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-arm-linux.tar.gz";
hash = "sha256-vY8K66k7KunpBUjFsJTTb+ur5n1XmU0/mYxhZsi9ycs=";
};
x86_64-darwin = fetchurl {
url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-macosx.tar.gz";
hash = "sha256-Y0JlOUl9Ego6LTxTCNny3P5c1H3fApPXQm7Z6Zhq9RA=";
};
aarch64-darwin = x86_64-darwin;
};
src = srcs.${stdenv.hostPlatform.system};
in
stdenv.mkDerivation {
inherit pname version src;
nativeBuildInputs = lib.optionals stdenv.isLinux [ autoPatchelfHook ];
buildInputs = [ python3 perl ] ++ lib.optionals stdenv.isLinux [ zlib bzip2 glib libxml2 ];
installPhase = ''
runHook preInstall
install -Dm755 bin/* -t $out/bin
runHook postInstall
'';
preFixup = ''
substituteInPlace $out/bin/get_species_taxids.sh \
--replace /bin/rm ${coreutils}/bin/rm
'';
meta = with lib; {
inherit (blast.meta) description homepage license;
platforms = [ "x86_64-linux" "aarch64-linux" "x86_64-darwin" "aarch64-darwin" ];
maintainers = with maintainers; [ natsukium ];
};
}