nixpkgs/pkgs/applications/science/biology
Peder Bergebakken Sundt 6f65a24431
Merge pull request #325860 from bcdarwin/bump-dcm2niix
dcm2niix: 1.0.20230411 -> 1.0.20240202
2024-07-21 01:18:30 +02:00
..
angsd
ants ants: 2.5.1 -> 2.5.2 2024-06-10 04:29:13 +00:00
aragorn treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
astral astral: make deterministic and clean up 2024-03-19 11:24:39 +01:00
bamtools treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
bayescan
bcftools bcftools: 1.19 -> 1.20 2024-04-16 00:22:42 +00:00
bedops
bedtools treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00
bftools treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00
bioawk treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
blast
bowtie treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00
bowtie2 treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00
bppsuite
bwa treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00
bwa-mem2 treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
cd-hit
clustal-omega
cmtk treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
conglomerate conglomerate: unstable-2017-09-10 -> unstable-2023-01-19 2024-05-14 14:28:10 +08:00
dcm2niix dcm2niix: 1.0.20230411 -> 1.0.20240202 2024-07-09 10:18:52 -04:00
deeptools deeptools: 3.5.4 -> 3.5.5 2024-03-09 10:06:54 +00:00
delly treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
diamond treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
dssp dssp: 4.4.5 -> 4.4.7 2024-05-03 10:51:52 +09:00
ecopcr
eggnog-mapper eggnog-mapper: 2.1.10 -> 2.1.12 2024-01-18 19:17:47 +00:00
emboss treewide: Remove the definite article from meta.description 2024-06-09 23:08:46 +02:00
est-sfs treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
exonerate
EZminc
fastp treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
febio-studio treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
flywheel-cli treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
freebayes
gatk gatk: 4.5.0.0 -> 4.6.0.0 2024-06-30 01:17:34 +00:00
genmap treewide: sha256 -> hash attribute for fetchgit 2024-07-14 19:10:08 +08:00
hh-suite hh-suite: fix build on GCC 13 2024-02-08 21:54:47 +00:00
hisat2
hmmer
igv treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00
inormalize inormalize: fix build on darwin 2024-01-21 23:26:55 +01:00
iqtree iqtree: 2.3.4 -> 2.3.5 2024-06-30 14:49:34 +00:00
itsx treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
iv
jbrowse jbrowse: 2.12.2 -> 2.12.3 2024-07-03 08:35:09 +00:00
kalign treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00
kallisto treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
kent kent: 466 -> 467 2024-06-25 05:23:39 +00:00
kssd
last last: 1544 -> 1548 2024-06-15 05:29:39 +00:00
macs2 macs2: refactor 2024-06-24 12:18:27 +02:00
macse treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
mafft mafft: enable simple test 2024-04-28 13:57:47 +09:00
manta
megahit treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00
meme-suite
messer-slim treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00
migrate treewide: fix uses of finalAttrs.pname in source urls 2024-07-12 20:23:39 -04:00
minc-tools
minc-widgets
minia treewide: remove licenses.agpl3 2024-03-21 18:09:24 +02:00
minimap2 treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00
mmseqs2 treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
mni_autoreg
mrbayes treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
mrtrix
muscle treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
N3 n3: fix build on darwin 2024-01-21 23:22:54 +01:00
nest nest: fix hash 2024-04-20 10:17:24 +02:00
neuron neuron: 8.2.3 -> 8.2.4; fixup 2024-06-04 22:29:48 +00:00
niftyreg
niftyseg
obitools treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
octopus treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
paml
picard-tools picard-tools: 3.1.1 -> 3.2.0 2024-06-28 01:41:05 +00:00
platypus treewide: Remove the definite article from meta.description 2024-06-09 23:08:46 +02:00
plink-ng treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00
prodigal treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
quast
raxml treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00
repseek treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
sambamba treewide: sha256 -> hash attribute for fetchgit 2024-07-14 19:10:08 +08:00
samblaster treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
samtools pkgs/applications: remove uneeded fetchpatch arguments 2024-05-21 03:12:20 +02:00
seaview treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
seqkit seqkit: 2.8.1 -> 2.8.2 2024-05-18 00:57:59 +00:00
seqtk seqtk: fix cross compilation, drop custom installPhase 2024-04-29 17:04:29 -04:00
snpeff
somatic-sniper treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
sortmerna treewide: switch from rocksdb -> rocksdb_8_3 2024-04-22 13:02:14 +02:00
sratoolkit treewide: Remove the definite article from meta.description 2024-06-09 23:08:46 +02:00
stacks stacks: 2.65 -> 2.66 2024-01-24 07:54:36 +00:00
star
strelka
subread
sumatools
svaba treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
tandem-aligner treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00
tebreak treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
treemix
trf
trimal trimal: 1.4.1 -> 1.5.0 2024-07-02 19:20:38 +00:00
trimmomatic treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00
truvari truvari: 4.1.0 -> 4.2.2 2024-07-04 21:38:05 +09:00
varscan
vcftools treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00
veryfasttree treewide: add meta.mainProgram to packages with a single binary 2024-03-19 03:14:51 +01:00
whisper treewide: remove unused occurence of fetchurl argument 2024-05-20 05:20:23 +02:00
xenomapper treewide: Remove indefinite article from meta.description 2024-06-09 23:07:45 +02:00