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571c71e6f7
We are migrating packages that meet below requirements:
1. using `callPackage`
2. called path is a directory
3. overriding set is empty (`{ }`)
4. not containing path expressions other than relative path (to
makenixpkgs-vet happy)
5. not referenced by nix files outside of the directory, other
than`pkgs/top-level/all-packages.nix`
6. not referencing nix files outside of the directory
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The tool is here: https://github.com/Aleksanaa/by-name-migrate.
48 lines
1.0 KiB
Nix
48 lines
1.0 KiB
Nix
{ lib
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, stdenv
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, fetchFromGitHub
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, fetchpatch
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, htslib
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, zlib
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, bzip2
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, xz
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, curl
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, openssl
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}:
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stdenv.mkDerivation rec {
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pname = "angsd";
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version = "0.940";
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src = fetchFromGitHub {
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owner = "ANGSD";
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repo = "angsd";
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sha256 = "sha256-Ppxgy54pAnqJUzNX5c12NHjKTQyEEcPSpCEEVOyZ/LA=";
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rev = version;
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};
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patches = [
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# Pull pending inclusion upstream patch for parallel buil fixes:
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# https://github.com/ANGSD/angsd/pull/590
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(fetchpatch {
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name = "parallel-make.patch";
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url = "https://github.com/ANGSD/angsd/commit/89fd1d898078016df390e07e25b8a3eeadcedf43.patch";
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hash = "sha256-KQgUfr3v8xc+opAm4qcSV2eaupztv4gzJJHyzJBCxqA=";
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})
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];
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buildInputs = [ htslib zlib bzip2 xz curl openssl ];
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enableParallelBuilding = true;
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makeFlags = [ "HTSSRC=systemwide" "prefix=$(out)" ];
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meta = with lib; {
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description = "Program for analysing NGS data";
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homepage = "http://www.popgen.dk/angsd";
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maintainers = [ maintainers.bzizou ];
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license = licenses.gpl2;
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};
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}
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