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571c71e6f7
We are migrating packages that meet below requirements:
1. using `callPackage`
2. called path is a directory
3. overriding set is empty (`{ }`)
4. not containing path expressions other than relative path (to
makenixpkgs-vet happy)
5. not referenced by nix files outside of the directory, other
than`pkgs/top-level/all-packages.nix`
6. not referencing nix files outside of the directory
7. not referencing `default.nix` (since it's changed to `package.nix`)
8. `outPath` doesn't change after migration
The tool is here: https://github.com/Aleksanaa/by-name-migrate.
40 lines
1022 B
Nix
40 lines
1022 B
Nix
{lib, stdenv, fetchFromGitHub, python27, htslib, zlib, makeWrapper}:
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let python = python27.withPackages (ps: with ps; [ cython ]);
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in stdenv.mkDerivation {
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pname = "platypus-unstable";
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version = "2018-07-22";
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src = fetchFromGitHub {
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owner = "andyrimmer";
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repo = "Platypus";
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rev = "3e72641c69800da0cd4906b090298e654d316ee1";
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sha256 = "0nah6r54b8xm778gqyb8b7rsd76z8ji4g73sm6rvpw5s96iib1vw";
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};
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nativeBuildInputs = [ makeWrapper ];
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buildInputs = [ htslib python zlib ];
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buildPhase = ''
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patchShebangs .
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make
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'';
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installPhase = ''
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mkdir -p $out/libexec/platypus
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cp -r ./* $out/libexec/platypus
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mkdir -p $out/bin
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makeWrapper ${python}/bin/python $out/bin/platypus --add-flags "$out/libexec/platypus/bin/Platypus.py"
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'';
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meta = with lib; {
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description = "Platypus variant caller";
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license = licenses.gpl3;
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homepage = "https://github.com/andyrimmer/Platypus";
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maintainers = with maintainers; [ jbedo ];
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platforms = platforms.x86_64;
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};
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}
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