mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-11-22 06:53:01 +00:00
84 lines
2.0 KiB
Nix
84 lines
2.0 KiB
Nix
{
|
||
lib,
|
||
python,
|
||
buildPythonPackage,
|
||
fetchFromGitHub,
|
||
cython,
|
||
pybind11,
|
||
tiledb,
|
||
numpy,
|
||
wheel,
|
||
isPy3k,
|
||
setuptools-scm,
|
||
psutil,
|
||
pandas,
|
||
}:
|
||
|
||
buildPythonPackage rec {
|
||
pname = "tiledb";
|
||
version = "0.32.2";
|
||
format = "setuptools";
|
||
|
||
src = fetchFromGitHub {
|
||
owner = "TileDB-Inc";
|
||
repo = "TileDB-Py";
|
||
rev = "refs/tags/${version}";
|
||
hash = "sha256-9UgT09KnCqQ7ip7sSp64Yy8Pstf1GCOVYOG0WM2P840=";
|
||
};
|
||
|
||
nativeBuildInputs = [
|
||
cython
|
||
pybind11
|
||
setuptools-scm
|
||
];
|
||
|
||
buildInputs = [ tiledb ];
|
||
|
||
propagatedBuildInputs = [
|
||
numpy
|
||
wheel # No idea why but it is listed
|
||
];
|
||
|
||
nativeCheckInputs = [
|
||
psutil
|
||
# optional
|
||
pandas
|
||
];
|
||
|
||
TILEDB_PATH = tiledb;
|
||
|
||
disabled = !isPy3k; # Not bothering with python2 anymore
|
||
|
||
postPatch = ''
|
||
# Hardcode path to shared object
|
||
substituteInPlace tiledb/__init__.py --replace \
|
||
'os.path.join(lib_dir, lib_name)' 'os.path.join("${tiledb}/lib", lib_name)'
|
||
|
||
# Disable failing test
|
||
substituteInPlace tiledb/tests/test_examples.py --replace \
|
||
"test_docs" "dont_test_docs"
|
||
# these tests don't always fail
|
||
substituteInPlace tiledb/tests/test_libtiledb.py --replace \
|
||
"test_varlen_write_int_subarray" "dont_test_varlen_write_int_subarray" \
|
||
--replace "test_memory_cleanup" "dont_test_memory_cleanup" \
|
||
--replace "test_ctx_thread_cleanup" "dont_test_ctx_thread_cleanup"
|
||
substituteInPlace tiledb/tests/test_metadata.py --replace \
|
||
"test_metadata_consecutive" "dont_test_metadata_consecutive"
|
||
'';
|
||
|
||
checkPhase = ''
|
||
pushd "$TMPDIR"
|
||
${python.interpreter} -m unittest tiledb.tests.all.suite_test
|
||
popd
|
||
'';
|
||
pythonImportsCheck = [ "tiledb" ];
|
||
|
||
meta = with lib; {
|
||
description = "Python interface to the TileDB storage manager";
|
||
homepage = "https://github.com/TileDB-Inc/TileDB-Py";
|
||
license = licenses.mit;
|
||
# tiledb/core.cc:556:30: error: ‘struct std::array<long unsigned int, 2>’ has no member named ‘second’
|
||
broken = true;
|
||
};
|
||
}
|