mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-11-22 06:53:01 +00:00
102 lines
1.9 KiB
Nix
102 lines
1.9 KiB
Nix
{
|
|
lib,
|
|
buildPythonPackage,
|
|
fetchFromGitHub,
|
|
hatch-vcs,
|
|
hatchling,
|
|
pytestCheckHook,
|
|
attrs,
|
|
importlib-resources,
|
|
jinja2,
|
|
looseversion,
|
|
matplotlib,
|
|
nibabel,
|
|
nilearn,
|
|
nipype,
|
|
nitransforms,
|
|
numpy,
|
|
packaging,
|
|
pandas,
|
|
pybids,
|
|
pyyaml,
|
|
scikit-image,
|
|
scipy,
|
|
seaborn,
|
|
svgutils,
|
|
templateflow,
|
|
traits,
|
|
transforms3d,
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "niworkflows";
|
|
version = "1.10.2";
|
|
pyproject = true;
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "nipreps";
|
|
repo = "niworkflows";
|
|
rev = "refs/tags/${version}";
|
|
hash = "sha256-29ZxLuKrvgCIOMMCUpi0HHhlNlgqUrUrSCiikwecmKw=";
|
|
};
|
|
|
|
pythonRelaxDeps = [ "traits" ];
|
|
|
|
build-system = [
|
|
hatch-vcs
|
|
hatchling
|
|
];
|
|
|
|
dependencies = [
|
|
attrs
|
|
importlib-resources
|
|
jinja2
|
|
looseversion
|
|
matplotlib
|
|
nibabel
|
|
nilearn
|
|
nipype
|
|
nitransforms
|
|
numpy
|
|
packaging
|
|
pandas
|
|
pybids
|
|
pyyaml
|
|
scikit-image
|
|
scipy
|
|
seaborn
|
|
svgutils
|
|
templateflow
|
|
traits
|
|
transforms3d
|
|
];
|
|
|
|
env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
|
|
|
|
nativeCheckInputs = [ pytestCheckHook ];
|
|
preCheck = ''export HOME=$(mktemp -d)'';
|
|
pytestFlagsArray = [ "niworkflows" ];
|
|
# try to download data:
|
|
disabledTests = [
|
|
"test_GenerateCifti"
|
|
"ROIsPlot"
|
|
"ROIsPlot2"
|
|
"test_SimpleShowMaskRPT"
|
|
"test_cifti_surfaces_plot"
|
|
"niworkflows.utils.misc.get_template_specs"
|
|
"niworkflows.interfaces.cifti._prepare_cifti"
|
|
];
|
|
disabledTestPaths = [ "niworkflows/tests/test_registration.py" ];
|
|
|
|
pythonImportsCheck = [ "niworkflows" ];
|
|
|
|
meta = with lib; {
|
|
description = "Common workflows for MRI (anatomical, functional, diffusion, etc.)";
|
|
mainProgram = "niworkflows-boldref";
|
|
homepage = "https://github.com/nipreps/niworkflows";
|
|
changelog = "https://github.com/nipreps/niworkflows/blob/${src.rev}/CHANGES.rst";
|
|
license = licenses.asl20;
|
|
maintainers = with maintainers; [ bcdarwin ];
|
|
};
|
|
}
|