{ lib, buildPythonPackage, fetchPypi, pythonAtLeast, pythonOlder, hatchling, hatch-vcs, numpy, packaging, importlib-resources, pydicom, pillow, h5py, scipy, git, pytest-doctestplus, pytest-httpserver, pytest-xdist, pytest7CheckHook, }: buildPythonPackage rec { pname = "nibabel"; version = "5.2.1"; pyproject = true; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; hash = "sha256-tsgLLnKOS8K2XxFC2bjSKHqRAqi/hHfhFe8NgzRVmXU="; }; nativeBuildInputs = [ hatchling hatch-vcs ]; propagatedBuildInputs = [ numpy packaging ] ++ lib.optionals (pythonOlder "3.9") [ importlib-resources ]; optional-dependencies = rec { all = dicom ++ dicomfs ++ minc2 ++ spm ++ zstd; dicom = [ pydicom ]; dicomfs = [ pillow ] ++ dicom; minc2 = [ h5py ]; spm = [ scipy ]; zstd = [ # TODO: pyzstd ]; }; nativeCheckInputs = [ git pytest-doctestplus pytest-httpserver pytest-xdist pytest7CheckHook ] ++ optional-dependencies.all; preCheck = '' export PATH=$out/bin:$PATH ''; disabledTestPaths = lib.optionals (pythonAtLeast "3.12") [ # uses distutils "nisext/tests/test_sexts.py" ]; meta = with lib; { homepage = "https://nipy.org/nibabel"; changelog = "https://github.com/nipy/nibabel/blob/${version}/Changelog"; description = "Access a multitude of neuroimaging data formats"; license = licenses.mit; maintainers = with maintainers; [ ashgillman ]; }; }