{ stdenv , lib , fetchFromGitHub , fetchpatch , fetchurl }: # This file is responsible for fetching the sage source and adding necessary patches. # It does not actually build anything, it just copies the patched sources to $out. # This is done because multiple derivations rely on these sources and they should # all get the same sources with the same patches applied. stdenv.mkDerivation rec { version = "10.5"; pname = "sage-src"; src = fetchFromGitHub { owner = "sagemath"; repo = "sage"; rev = version; hash = "sha256-OiGMc3KyHWnjVWXJ/KiqEQS1skM9nPLYcoMK9kw4718="; }; # contains essential files (e.g., setup.cfg) generated by the bootstrap script. # TODO: investigate https://github.com/sagemath/sage/pull/35950 configure-src = fetchurl { # the hash below is the tagged commit's _parent_. it can also be found by looking for # the "configure" asset at https://github.com/sagemath/sage/releases/tag/${version} url = "mirror://sageupstream/configure/configure-f6ad0ecf1f4a269f5954d5487336b13f70624594.tar.gz"; hash = "sha256-VANtZDUhjOHap9XVEuG/1003E+1XRdXEnuH15hIqJd4="; }; # Patches needed because of particularities of nix or the way this is packaged. # The goal is to upstream all of them and get rid of this list. nixPatches = [ # Parallelize docubuild using subprocesses, fixing an isolation issue. See # https://groups.google.com/forum/#!topic/sage-packaging/YGOm8tkADrE ./patches/sphinx-docbuild-subprocesses.patch # After updating smypow to (https://github.com/sagemath/sage/issues/3360) # we can now set the cache dir to be within the .sage directory. This is # not strictly necessary, but keeps us from littering in the user's HOME. ./patches/sympow-cache.patch ] ++ lib.optionals (stdenv.cc.isClang) [ # https://github.com/NixOS/nixpkgs/pull/264126 # Dead links in python sysconfig cause LLVM linker warnings, leading to cython doctest failures. ./patches/silence-linker.patch # Stack overflows during doctests; this does not change functionality. ./patches/disable-singular-doctest.patch ]; # Since sage unfortunately does not release bugfix releases, packagers must # fix those bugs themselves. This is for critical bugfixes, where "critical" # == "causes (transient) doctest failures / somebody complained". bugfixPatches = [ # compile libs/gap/element.pyx with -O1 # a more conservative version of https://github.com/sagemath/sage/pull/37951 ./patches/gap-element-crash.patch # https://github.com/sagemath/sage/pull/38940, positively reviewed, to land in 10.6.beta0 (fetchpatch { name = "simplicial-sets-flaky-test.patch"; url = "https://github.com/sagemath/sage/commit/1830861c5130d30b891e8c643308e1ceb91ce2b5.diff"; hash = "sha256-6MbZ+eJPFBEtnJsJX0MgO2AykPXSeuya0W0adiIH+KE="; }) ]; # Patches needed because of package updates. We could just pin the versions of # dependencies, but that would lead to rebuilds, confusion and the burdons of # maintaining multiple versions of dependencies. Instead we try to make sage # compatible with never dependency versions when possible. All these changes # should come from or be proposed to upstream. This list will probably never # be empty since dependencies update all the time. packageUpgradePatches = [ ]; patches = nixPatches ++ bugfixPatches ++ packageUpgradePatches; # do not create .orig backup files if patch applies with fuzz patchFlags = [ "--no-backup-if-mismatch" "-p1" ]; postPatch = '' # Make sure sage can at least be imported without setting any environment # variables. It won't be close to feature complete though. sed -i \ "s|var(\"SAGE_ROOT\".*|var(\"SAGE_ROOT\", \"$out\")|" \ src/sage/env.py # sage --docbuild unsets JUPYTER_PATH, which breaks our docbuilding # https://trac.sagemath.org/ticket/33650#comment:32 sed -i "/export JUPYTER_PATH/d" src/bin/sage ''; buildPhase = "# do nothing"; installPhase = '' cp -r . "$out" tar xzf ${configure-src} -C "$out" rm "$out/configure" ''; }