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30554 Commits

Author SHA1 Message Date
Joachim Fasting
46b07b335b Merge pull request #16379 from mimadrid/init/bcftools-1.3.1 
bcftools: init at 1.3.1
 2016-06-24 22:15:51 +02:00
mimadrid
d3da5cbf44
htslib: init at 1.3.1 2016-06-24 21:08:16 +02:00
Frederik Rietdijk
59c7eb6025 Merge pull request #16476 from aherrmann/matplotlib-tkagg 
Matplotlib tkagg
 2016-06-24 20:41:40 +02:00
Andreas Herrmann
ed14f12b89 matplotlib: Add support for the TkAgg backend 
Fixes #15993
 2016-06-24 15:41:46 +02:00
Alexander Ried
4f41f475d1 libinput: 1.3.2 -> 1.3.3 2016-06-24 12:25:29 +02:00
Andreas Herrmann
616f846894 matplotlib: Don't search in global paths 
Sets the `basedirlist` option in setup.cfg such that distutils does not search
for headers and libraries in `/usr`, and `/usr/local`.

Otherwise the build can fail on non-NixOS machines, see #15993.
 2016-06-24 12:09:56 +02:00
zimbatm
e0dd0c902d Merge pull request #16446 from vrthra/gnupg21 
gnupg21: 2.1.12 -> 2.1.13
 2016-06-24 01:04:31 +01:00
Joachim Fasting
01804364d2
terra: set meta.platforms 
Upstream claims MacOS, Linux, and Windows as supported platforms; set to unix
for now.
 2016-06-23 23:28:19 +02:00
zimbatm
ab7f92bf69 Merge pull request #16440 from vrthra/jim 
jimtcl: 0.75 -> 0.76
 2016-06-23 17:34:28 +01:00
Jussi Mäki
d87455a099 pypi2nix: Use pypi mirror (#16451) 2016-06-23 12:35:29 +02:00
Tobias Geerinckx-Rice
a055152963
sauce-connect: listify phases and run in correct order 
patchPhase was being run after installPhase, causing patchelf to be
run on the left-behind binary instead of the copy in $out. Fixes:

  ```
  $ .../bin/sc
  bash: .../bin/sc: No such file or directory
  $ patchelf --print-interpreter .../bin/sc
  /lib64/ld-linux-x86-64.so.2
  ```
 2016-06-23 12:13:24 +02:00
Tobias Geerinckx-Rice
6669fac77e
qt55.qtbase: remove unused dlopen-gtkstyle.patch 2016-06-23 12:13:24 +02:00
Mathias Schreck
9b610e57bb sauce-connect: 4.3.14 -> 4.3.16 2016-06-23 11:30:07 +02:00
Rahul Gopinath
1ad68e58df libgpg-error: 1.21 -> 1.23 2016-06-23 00:34:35 -07:00
Rahul Gopinath
ec91698ace libgcrypt: 1.7.0 -> 1.7.1 2016-06-23 00:32:25 -07:00
Vladimír Čunát
aa9a04883e Revert "Merge branch 'staging'" due to glibc 
The main output started to retain dependency on bootstrap-tools; see
https://github.com/NixOS/nixpkgs/pull/15867#issuecomment-227949096

This reverts commit c05d829598, reversing
changes made to f073df60d6.
 2016-06-23 09:25:10 +02:00
Rahul Gopinath
ffc05cf028 jimtcl: 0.75 -> 0.76 2016-06-22 20:05:17 -07:00
Joachim Fasting
cd96d0c7d7
terra: specify tool paths via Makefile.inc 
Judging by the build output, which doesn't find what it's looking for
anyway.
 2016-06-23 01:31:23 +02:00
Joachim Fasting
9983937d1a
terra: apply PaX markings 
For grsecurity support
 2016-06-23 01:31:13 +02:00
Joachim Fasting
2f56af5f1a
ragel: set meta.platforms 2016-06-23 00:55:54 +02:00
Joachim Fasting
71a5f2fad1
colm: set meta.platforms per upstream 2016-06-23 00:55:54 +02:00
zimbatm
2e3fa1db3a Merge pull request #16417 from ericsagnes/fix/php-platform 
php: add meta.platforms
 2016-06-22 19:58:40 +01:00
Vladimír Čunát
152c72c022 Merge #16426: pcre: fix the less common variants on Darwin 2016-06-22 19:59:29 +02:00
Tobias Geerinckx-Rice
ee2f060ff7
v8: remove unused fix-GetLocalizedMessage-usage.patch 2016-06-22 19:49:48 +02:00
Johannes 'fish' Ziemke
1b34f4095e pcre: Fix postFixup script 
So far the shell globbing only resolved properly on linux.
 2016-06-22 18:35:28 +02:00
Vladimír Čunát
c05d829598 Merge branch 'staging' 2016-06-22 10:49:56 +02:00
Eric Sagnes
1485b3a6c0 php: add meta.platforms 2016-06-22 17:45:52 +09:00
Vladimír Čunát
48f1d9c483 libav: fixup build after e9cce6d 
Fixes #16411. The patch wasn't applied anymore.
 2016-06-22 10:25:06 +02:00
Tobias Geerinckx-Rice
271443daa1
gobject-introspection: remove unused separate-rpath-arg.patch 2016-06-22 03:58:55 +02:00
Tobias Geerinckx-Rice
30ba40798c
zeromq: remove unused sodium_warning.patch 2016-06-22 03:58:55 +02:00
Tobias Geerinckx-Rice
12bf38609e
pythonPackages.scipy: remove unused scipy-0.16.1-decorator-fix.patch 2016-06-22 02:13:39 +02:00
Tobias Geerinckx-Rice
61ba956cc8
binutils: remove unused pt-pax-flags-20121023.patch 2016-06-22 01:25:26 +02:00
zimbatm
6596d1eb61 Merge pull request #16389 from mcmtroffaes/feature/wolfssl-3.9.6 
wolfssl: 3.9.0 -> 3.9.6, split package
 2016-06-21 14:22:44 +01:00
Frederik Rietdijk
8ef747baed Merge pull request #16334 from artuuge/theano_cudnn 
Theano-cuda: init at 0.8.2
 2016-06-21 14:26:51 +02:00
Matthias C. M. Troffaes
c227201955 wolfssl: 3.9.0 -> 3.9.6, split package 2016-06-21 13:22:06 +01:00
Peter Simons
bc08bef615 Merge pull request #16382 from Ericson2314/morgue 
Remove misc dead code
 2016-06-21 11:54:14 +02:00
John Ericson
7cbf4a56f7 Remove dead pkgs/development/compilers/ghc/with-packages.nix 
Superseded by `/pkgs/development/haskell-modules/with-packages-wrapper.nix`
 2016-06-20 23:53:09 -07:00
Pascal Wittmann
5844bc63df Merge pull request #16372 from mimadrid/update/filezilla-3.18.0 
filezilla: 3.17.0.1 -> 3.18.0
 2016-06-21 01:27:36 +02:00
Peter Simons
99c6c9d42f Merge pull request #16370 from rasendubi/haskell-hoogle 
haskell-hoogle: adapt to GHC docs split
 2016-06-20 23:52:47 +02:00
mimadrid
baab0ff6d3
libfilezilla: 0.5.1 -> 0.5.3 2016-06-20 22:46:41 +02:00
Alexey Shmalko
87aa864ff9
haskell-hoogle: adapt to GHC docs split 
The docs were split at #16167 and broke google support. @peti fixed
build, however hoogle still didn't see packages shipped with GHC. This
patch fixes location of the libraries shipped with GHC.
 2016-06-20 22:52:20 +03:00
Tobias Geerinckx-Rice
ffd2afd89d
dub: 0.9.25 -> 1.0.0 2016-06-20 19:34:19 +02:00
Peter Simons
06d3636596 git-annex: update sha256 hash 2016-06-20 17:01:36 +02:00
Peter Simons
1178ccf085 hackage-packages.nix: update Haskell package set 
This update was generated by hackage2nix v20160613-7-g3089457 using the following inputs:

  - Hackage: 08c95c9ddf
  - LTS Haskell: 2a2cddb443
  - Stackage Nightly: 5f88469291
 2016-06-20 17:01:36 +02:00
Bjørn Forsman
099d3dc43b microscheme: 0.9.2 -> 0.9.3 2016-06-20 16:29:23 +02:00
Vladimír Čunát
8bf002daac libcxx-3.8: apply Darwin-specific patch only on Darwin 
... to better decouple different platforms (in future).
 2016-06-20 15:17:41 +02:00
Vladimír Čunát
c67e08e1af Merge #16323: llvmPackages_38 fixes 2016-06-20 15:17:40 +02:00
Peter Simons
06489a1850 haskell-hoogle: remedy some fallout from https://github.com/NixOS/nixpkgs/pull/16167 
ghcWithHoogle builds with this patch applied, but it's probably still broken in
the sense that links might point nowhere or that the generated databases and/or
documentation might be incomplete.
 2016-06-20 14:50:52 +02:00
Vladimír Čunát
b626e83838 Merge #16291: krb5: fix compilation on weird prefixes 
(when nix store prefix contains a "+" character)
 2016-06-20 14:46:19 +02:00
Bjørn Forsman
bd01fad0ed Captialize meta.description of all packages 
In line with the Nixpkgs manual.

A mechanical change, done with this command:

  find pkgs -name "*.nix" | \
      while read f; do \
          sed -e 's/description\s*=\s*"\([a-z]\)/description = "\u\1/' -i "$f"; \
      done

I manually skipped some:

* Descriptions starting with an abbreviation, a user name or package name
* Frequently generated expressions (haskell-packages.nix)
 2016-06-20 13:55:52 +02:00