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Commit Graph

62 Commits

Author SHA1 Message Date
Robert Scott
8dda355280 apptainer: disable fortify3 hardening flag 2023-07-09 11:51:26 +01:00
Yueh-Shun Li
722948a942 singularity, apptainer: adjust dependencies 2023-04-08 17:13:35 +08:00
Yueh-Shun Li
f6e7fccfa6 apptainer, singularity: unify the PATH prefix to defaultPath and wrapProgram 
Use defaultPathInputs to control both path prefixes,
reducing the number of input lists to maintain.
 2023-04-06 12:40:09 +08:00
Yueh-Shun Li
1f32cee4d4 apptainer, singularity: add passthru.tests.image-hello-cowsay 
Add image-building tests with singularity-tools
 2023-04-05 04:08:29 +08:00
Yueh-Shun Li
e5d66059d9 apptainer: 1.1.5 -> 1.1.7, singularity: 3.10.4 -> 3.11.1 2023-04-05 00:39:03 +08:00
Felix Buehler
d10e69c86b treewide: deprecate isNull 
https://nixos.org/manual/nix/stable/language/builtins.html#builtins-isNull
 2023-03-06 22:40:04 +01:00
Yueh-Shun Li
6e9902c7f6 apptainer: always specify either --with-suid or --without-suid build flag 2023-02-19 07:55:10 +00:00
Gaetan Lepage
467eced7c5 apptainer: 1.1.3 -> 1.1.5 2023-02-10 16:36:22 +01:00
Yueh-Shun Li
d35f5c2695 apptainer-overriden-nixos,singularity-overriden-nixos: init 2023-02-08 18:04:05 +08:00
Yueh-Shun Li
71a89291ee apptainer, singularity: enable non-FHS --fakeroot support 
This patch provides input arguments `newuidmapPath` and `newgidmapPath`
for apptainer and singularity to specify the path to the SUID-ed executables
newuidmap and newgidmap where they are not available from the FHS PATH.

As NixOS places those suided executables in a non-FHS position
(/run/wrapper/bin), this patch provides
programs.singularity.enableFakeroot option and implement with the above
input parameters.
 2023-02-08 18:04:05 +08:00
Yueh-Shun Li
50788d2fb0 apptainer, singularity: fix defaultPath and reflect upstream changes 
Upstream changes:
singularity 3.8.7 (the legacy) -> apptainer 1.1.3 (the renamed) / singularity 3.10.4 (Sylabs's fork)

Build process:
*   Share between different sources
*   Fix the sed regexp to make defaultPath patch work
*   allowGoReference is now true
*   Provied input parameter removeCompat (default to false)
    that removes the compatible "*singularity*" symbolic links
    and related autocompletion files when projectName != "singularity"
*   Change localstatedir to /var/lib
*   Format with nixpkgs-fmt
*   Fix the defaultPath patching
    and use it instead of the `<executable> path` config directive
    deprecated in Apptainer
*   Provide dependencies for new functionalities such as
    squashfuse (unprivileged squashfs mount)
*   Provide an attribute `defaultPathInputs` to override
    prefix of container runtime default PATH

NixOS module programs.singularity:
*   Allow users to specify packages
*   Place related directories to /var/lib
*   Format with nixpkgs-fmt

singularity-tools:
*   Allow users to specify packages
*   Place related directories to /var/lib when building images in VM
 2023-02-08 18:03:11 +08:00
R. Ryantm
9b9db934cd singularity: 3.8.6 -> 3.8.7 2022-03-20 00:22:52 +00:00
R. Ryantm
4fba64110f singularity: 3.8.5 -> 3.8.6 2022-02-10 11:39:21 -08:00
Justin Bedo
eab0561eb0
singularity: 3.8.4 -> 3.8.5 2021-11-30 20:12:29 +11:00
Justin Bedo
10a145c518
singularity: 3.8.3 -> 3.8.4 2021-11-10 08:08:26 +11:00
Justin Bedo
c2073fcb1a
singularity: 3.8.2 -> 3.8.3 2021-09-08 15:20:34 +10:00
Justin Bedo
99eafb132b
singularity: 3.8.1 -> 3.8.2 2021-09-02 12:55:16 +10:00
R. RyanTM
ffb8183623 singularity: 3.8.0 -> 3.8.1 2021-08-18 00:25:25 +00:00
Justin Bedo
c837236c77
singularity: 3.7.4 -> 3.8.0 2021-06-16 08:10:45 +10:00
Justin Bedo
044ba9b560
singularity: 3.7.3 -> 3.7.4 2021-05-27 17:03:16 +10:00
R. RyanTM
782638c04a singularity: 3.7.2 -> 3.7.3 2021-04-11 15:54:29 +00:00
R. RyanTM
5f41ef7d78 singularity: 3.7.1 -> 3.7.2 2021-03-13 13:50:35 +00:00
Sandro Jäckel
1497f9151d
singularity: remove unused inputs 2021-03-01 10:46:57 +01:00
Sandro
b881f100f6
Merge pull request #111625 from jbedo/singularity 
singularity: 3.7.0 -> 3.7.1
 2021-02-02 13:11:41 +01:00
Justin Bedo
efd372d82c
singularity: 3.7.0 -> 3.7.1 2021-02-02 14:05:34 +11:00
Pavol Rusnak
a6ce00c50c
treewide: remove stdenv where not needed 2021-01-25 18:31:47 +01:00
Ben Siraphob
108bdac3d9 pkgs/applications: stdenv.lib -> lib 2021-01-15 14:24:03 +07:00
Profpatsch
4a7f99d55d treewide: with stdenv.lib; in meta -> with lib; 
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
 2021-01-11 10:38:22 +01:00
Sandro
d3badf3b43
Merge pull request #105075 from r-ryantm/auto-update/singularity 
singularity: 3.6.4 -> 3.7.0
 2020-11-26 23:10:50 +01:00
R. RyanTM
1b0e3aa842 singularity: 3.6.4 -> 3.7.0 2020-11-26 20:28:31 +00:00
Graham Christensen
bc49a0815a
utillinux: rename to util-linux 2020-11-24 12:42:06 -05:00
zowoq
90bb6fbb24 singularity: drop unneeded removeReferencesTo 2020-11-18 08:13:34 +10:00
Justin Bedo
8a788b8587
singularity: 3.6.3 -> 3.6.4 
Important security release addressing CVE-2020-15229.
 2020-10-19 09:11:34 +11:00
Justin Bedo
efa99abf28
singularity: 3.6.2 -> 3.6.3 2020-09-21 12:07:38 +10:00
zowoq
f3623b8435 singularity: use upstream vendor 2020-09-08 16:32:39 +10:00
Jörg Thalheim
dee0f69844
singularity: remove remove-references-to call 2020-08-28 13:19:12 +01:00
Justin Bedo
1b74b520b7
singularity: 3.6.1 -> 3.6.2 2020-08-26 14:12:17 +10:00
Justin Bedo
712f1ee9aa
singularity: 3.2.1 -> 3.6.1 2020-07-22 08:51:37 +10:00
zowoq
b5dc07a4b4 treewide: use $out instead of $bin with buildGoPackage 2020-04-28 20:30:29 +10:00
Michael Reilly
84cf00f980
treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
Jörg Thalheim
aa7b26fe29
singularity: fix build with strict deps 2020-03-23 08:16:38 +00:00
Frederik Rietdijk
98640fd482 Merge master into staging-next 2019-08-27 16:36:47 +02:00
scalavision
3ce3e75946 singularity: prepatch path to cp in 3.2.1 2019-08-25 18:31:17 +00:00
volth
46420bbaa3 treewide: name -> pname (easy cases) (#66585) 
treewide replacement of

stdenv.mkDerivation rec {
  name = "*-${version}";
  version = "*";

to pname
 2019-08-15 13:41:18 +01:00
Justin Bedo
086d5998dd
singularity: 3.0.1 -> 3.2.1 2019-06-18 12:05:42 +10:00
volth
f3282c8d1e treewide: remove unused variables (#63177) 
* treewide: remove unused variables

* making ofborg happy
 2019-06-16 19:59:05 +00:00
Justin Bedő
05ab1a6e5a
Merge branch 'master' into singularity 2019-02-17 21:49:37 +00:00
scalavision
f08b99c42f singularity: rewrite path to cp in bootstrap script 2019-02-05 16:53:33 -05:00
scalavision
f392a07e61 singularity: 2.6.0 -> 2.6.1 2019-02-05 13:13:32 -05:00
Justin Bedo
5611397f33
singularity: 2.6.0 -> 3.0.1 2019-01-31 09:21:18 +11:00